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BioLiP
>rna
gcuaaaccuagccccaaaccccaccuuacuaccagacaaccuuagccaaaccauuuacccaaauaaaguauaggcgauag
aaauugaaauggcgcaauagauauaguaccgcaagggaaagaugaaaaacaagcauaauauagcaaggacuaaccccuau
accuucugcaaugaauuaacuagaaauaacuuugcaaggagagccaaagcuaagacccccgaaaccagacgagcuaccua
agaacagcuaaaagagcacacccgucuauguagcaaaauagugggaagauuuauagguagaggcgacaaaccuaccgagc
cuggugauagcugguuguccaagauagaaucuuaguucaacuuuaaauuugcccacagaacccaaauccccuuguaaauu
uaacuguuaguccaaagaggaacagcucuuuggacacuaggaaaaaaccuuguagagagaguaaaaaauuuaacacccau
aguaggccuaaaagcagccaccaauuaagaaagcguucaagcucaacacaaaaaucccaaacauauaacugaacuccuca
cacccaauuggaccaaucuaucacccuauagaagaacuaauguuaguauaaguaacaugaaaacauucuccuccgcauaa
gccugcgucagauacugacaauuaacagcccaauaucuacaaucaaccaacaagucauuauuacccucacugucaaccca
acacaggcaugcucauaaggaaagguuaaaaaaaguaaaaggaacucggcaaaucuuaccccgccuguuuaccaaaaaca
ucaccucuagcaucaccaguauuagaggcaccgccuuccuuaaauagggauggcuccacgaggguucagcugucucuuac
uuuuaaccagugaaauugaccugcccgugagaggcgggcauaacacagcaagacgagagacccuauggagcuuuaauuua
uuaaugcaaacaaccugcauuaaaaauuucgguuggggcgaccucggagcagaacccaaccuccgagcaguacaugcuaa
gacuucaccagucaaagcgaaccucaauugauccaauaacuugaccaacggaacaaguuacccuagggaaauccuauucu
agaguccauaucaacaauaggguuuacgaccucguuggaucaggacaucccgauggugcagccgcuauuaaagguucguu
uguucaacgauuaaaguccuacgugaucugaguucagaccggaguaauccaggucgguuucuaucuacuuuaauuccucc
cuguacgaaaggacaagagaaauaaggccuacuucacaaagcgccuucccccguaaaugauaucaucucaacuuaguauu
auacccacacacccaagaacaggguu

The query sequence (length=1386) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7of3:A 1386 1386 1.0000 1.0000 1.0000 0.0
2 7of0:A 1376 1386 0.9928 1.0000 0.9928 0.0
3 7of5:A 1389 1402 0.9906 0.9885 0.9793 0.0
4 7of2:A 1410 1419 0.9935 0.9766 0.9704 0.0
5 7of7:A 1376 1402 0.9812 0.9884 0.9700 0.0
6 7oic:A 1383 1409 0.9798 0.9819 0.9638 0.0
7 7ods:A 1445 1430 0.9877 0.9474 0.9573 0.0
8 7odr:A 1448 1430 0.9870 0.9448 0.9566 0.0
9 7odt:A 1453 1456 0.9971 0.9511 0.9492 0.0
10 7o9m:A 1454 1458 0.9971 0.9505 0.9479 0.0
11 7o9k:A 1436 1448 0.9913 0.9568 0.9489 0.0
12 8qsj:A 1418 1419 0.9747 0.9528 0.9521 0.0
13 8pk0:A 1423 1445 0.9798 0.9543 0.9398 0.0
14 7of4:A 1463 842 0.5988 0.5673 0.9857 0.0 7of6:A
15 7of4:A 1463 551 0.3853 0.3650 0.9691 0.0 7of6:A
16 6zsa:XA 1499 856 0.6032 0.5577 0.9766 0.0 6zsb:XA, 6zsd:XA, 6zse:XA, 6zsg:XA
17 6zsa:XA 1499 561 0.3838 0.3549 0.9483 0.0 6zsb:XA, 6zsd:XA, 6zse:XA, 6zsg:XA
18 7pd3:A 1280 841 0.5952 0.6445 0.9810 0.0
19 7pd3:A 1280 366 0.2496 0.2703 0.9454 5.32e-156
20 7og4:XA 1498 856 0.6032 0.5581 0.9766 0.0
21 7og4:XA 1498 559 0.3817 0.3531 0.9463 0.0
22 6zsc:XA 1500 857 0.6032 0.5573 0.9755 0.0
23 6zsc:XA 1500 561 0.3838 0.3547 0.9483 0.0
24 6zs9:XA 1501 858 0.6032 0.5570 0.9744 0.0
25 6zs9:XA 1501 561 0.3838 0.3544 0.9483 0.0
26 6i9r:A 1501 858 0.6025 0.5563 0.9732 0.0
27 6i9r:A 1501 559 0.3824 0.3531 0.9481 0.0
28 7oid:A 1472 850 0.5974 0.5625 0.9741 0.0 7oie:A
29 7oid:A 1472 554 0.3824 0.3601 0.9567 0.0 7oie:A
30 5ool:A 1441 841 0.5916 0.5690 0.9750 0.0
31 5ool:A 1441 551 0.3817 0.3671 0.9601 0.0
32 7a5j:A 1492 841 0.5916 0.5496 0.9750 0.0
33 7a5j:A 1492 427 0.2944 0.2735 0.9555 0.0
34 7a5j:A 1492 125 0.0887 0.0824 0.9840 4.74e-57
35 7a5h:A 1457 841 0.5916 0.5628 0.9750 0.0
36 7a5h:A 1457 551 0.3817 0.3631 0.9601 0.0
37 8k2a:L1 1500 862 0.6010 0.5553 0.9664 0.0 8k2b:L1, 8xt0:L1, 8xt1:L1, 8xt2:L1, 8xt3:L1
38 8k2a:L1 1500 555 0.3831 0.3540 0.9568 0.0 8k2b:L1, 8xt0:L1, 8xt1:L1, 8xt2:L1, 8xt3:L1
39 3j7y:A 1472 853 0.5952 0.5605 0.9672 0.0 3j9m:A, 6nu2:A, 6nu3:A
40 3j7y:A 1472 554 0.3824 0.3601 0.9567 0.0 3j9m:A, 6nu2:A, 6nu3:A
41 7a5f:A3 1503 853 0.5952 0.5489 0.9672 0.0 7a5g:A3, 7a5k:A3
42 7a5f:A3 1503 427 0.2944 0.2715 0.9555 0.0 7a5g:A3, 7a5k:A3
43 7a5f:A3 1503 125 0.0887 0.0818 0.9840 4.74e-57 7a5g:A3, 7a5k:A3
44 6zm6:A 1531 872 0.6032 0.5460 0.9587 0.0
45 6zm6:A 1531 569 0.3874 0.3508 0.9438 0.0
46 8any:A 1558 872 0.6032 0.5366 0.9587 0.0 8oir:B8, 8oit:B8, 7qi4:A, 7qi5:A, 7qi6:A
47 8any:A 1558 438 0.2994 0.2664 0.9475 0.0 8oir:B8, 8oit:B8, 7qi4:A, 7qi5:A, 7qi6:A
48 8any:A 1558 125 0.0887 0.0789 0.9840 4.74e-57 8oir:B8, 8oit:B8, 7qi4:A, 7qi5:A, 7qi6:A
49 6zm5:A 1534 875 0.6032 0.5450 0.9554 0.0
50 6zm5:A 1534 569 0.3874 0.3501 0.9438 0.0
51 7l08:A 1527 875 0.6032 0.5475 0.9554 0.0 7l20:A, 6vlz:A, 6vmi:A
52 7l08:A 1527 564 0.3874 0.3517 0.9521 0.0 7l20:A, 6vlz:A, 6vmi:A
53 7a5i:A3 1485 862 0.5952 0.5556 0.9571 0.0
54 7a5i:A3 1485 554 0.3824 0.3569 0.9567 0.0
55 7qh7:A 1256 853 0.5736 0.6330 0.9320 0.0
56 7qh7:A 1256 472 0.3261 0.3599 0.9576 0.0
57 7po4:A 1145 856 0.5671 0.6865 0.9182 0.0
58 7po4:A 1145 130 0.0895 0.1083 0.9538 4.77e-52
59 7po4:A 1145 110 0.0772 0.0934 0.9727 1.73e-46
60 7po4:A 1145 82 0.0541 0.0655 0.9146 3.85e-23
61 7oi8:A 1092 479 0.3391 0.4304 0.9812 0.0 7oi9:A, 7oia:A, 7oib:A, 5oom:A
62 7oi8:A 1092 242 0.1710 0.2170 0.9793 5.63e-116 7oi9:A, 7oia:A, 7oib:A, 5oom:A
63 7oi8:A 1092 254 0.1688 0.2143 0.9213 9.70e-94 7oi9:A, 7oia:A, 7oib:A, 5oom:A
64 7oi8:A 1092 125 0.0808 0.1026 0.8960 2.27e-35 7oi9:A, 7oia:A, 7oib:A, 5oom:A
65 7oi8:A 1092 34 0.0245 0.0311 1.0000 2.35e-10 7oi9:A, 7oia:A, 7oib:A, 5oom:A
66 7oi7:A 1054 479 0.3391 0.4459 0.9812 0.0
67 7oi7:A 1054 254 0.1688 0.2220 0.9213 9.70e-94
68 7oi7:A 1054 124 0.0859 0.1129 0.9597 2.22e-50
69 7oi7:A 1054 81 0.0584 0.0769 1.0000 1.75e-36
70 7oi7:A 1054 125 0.0808 0.1063 0.8960 2.27e-35
71 7oi7:A 1054 34 0.0245 0.0323 1.0000 2.35e-10
72 7oi6:A 1208 479 0.3391 0.3891 0.9812 0.0
73 7oi6:A 1208 372 0.2511 0.2881 0.9355 1.49e-151
74 7oi6:A 1208 254 0.1688 0.1937 0.9213 9.70e-94
75 7oi6:A 1208 125 0.0808 0.0927 0.8960 2.27e-35
76 7oi6:A 1208 34 0.0245 0.0281 1.0000 2.35e-10
77 8qu5:A 1049 447 0.3160 0.4175 0.9799 0.0
78 8qu5:A 1049 242 0.1710 0.2259 0.9793 5.63e-116
79 8qu5:A 1049 241 0.1595 0.2107 0.9170 1.63e-86
80 8qu5:A 1049 125 0.0808 0.1068 0.8960 2.27e-35
81 8qu5:A 1049 34 0.0245 0.0324 1.0000 2.35e-10
82 8qu1:A 938 448 0.3088 0.4563 0.9554 0.0
83 8qu1:A 938 174 0.1190 0.1759 0.9483 2.16e-70
84 8qu1:A 938 121 0.0837 0.1237 0.9587 1.03e-48
85 8qu1:A 938 125 0.0808 0.1194 0.8960 2.27e-35
86 8qu1:A 938 34 0.0245 0.0362 1.0000 2.35e-10
87 8qu1:A 938 32 0.0231 0.0341 1.0000 3.04e-09
88 7qh6:A 1133 302 0.2078 0.2542 0.9536 4.26e-132
89 7qh6:A 1133 245 0.1746 0.2136 0.9878 1.56e-121
90 7qh6:A 1133 257 0.1739 0.2127 0.9377 3.44e-103
91 7qh6:A 1133 185 0.1328 0.1624 0.9946 4.51e-92
92 7qh6:A 1133 155 0.1046 0.1280 0.9355 3.66e-58
93 5aj4:BA 1515 828 0.4589 0.4198 0.7681 2.62e-114 4v19:A
94 5aj4:BA 1515 499 0.2937 0.2686 0.8156 4.42e-107 4v19:A
95 8oin:B8 1571 833 0.4596 0.4055 0.7647 2.64e-109 8oiq:B8
96 8oin:B8 1571 271 0.1696 0.1496 0.8672 3.56e-78 8oiq:B8
97 7nqh:BA 1544 833 0.4596 0.4126 0.7647 2.64e-109 7nql:BA, 7nsh:BA, 7nsi:BA, 7nsj:BA, 6ydp:BA, 6ydw:BA
98 7nqh:BA 1544 511 0.2965 0.2662 0.8043 1.25e-97 7nql:BA, 7nsh:BA, 7nsi:BA, 7nsj:BA, 6ydp:BA, 6ydw:BA
99 6gaw:BA 1549 833 0.4596 0.4112 0.7647 2.64e-109 6gb2:BA
100 6gaw:BA 1549 516 0.2980 0.2666 0.8004 9.70e-94 6gb2:BA
101 4ce4:A 1444 505 0.2965 0.2846 0.8139 5.71e-106
102 4ce4:A 1444 183 0.1082 0.1039 0.8197 2.27e-35

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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