>rna
gcuaaaccuagccccaaaccccaccuuacuaccagacaaccuuagccaaaccauuuacauaaaguauaggcgauagaaau
ugauggcgcaauagauauaguaccgcaagggaaagaugaaaaaccaagcauaauauagcaaggacuaaccccuauaccuu
cugcauaaugaauuaacuagaaauaacuuugcaaggagagccaaagcuaagacccccgaaaccagacgagcuaccuaaga
acagcuaaaagagcacacccgucuauguagcaaaauagugggaagauuuauagguagaggcgacaaaccuaccgagccug
gugauagcugguuguccaagauagaaucuuaguucaacuuuaaauuugcccacagaacccucuaaauccccuuguaaauu
uaacuguuaguccaaagaggaacagcucuuuggacacuaggaaaaaaccuuguagagagaguaaaaaauuuaacacccau
aguaggccuaaaagcagccaccaauuaagaaagcguucaagcucaacacaaaaaucccaaacauauaacugaacuccuca
cacccaauuggaccaaucuaucacccuauagaagaacuaauguuaguauaaguaacaugaaaacauucuccuccgcauaa
gccugcgucagauacugacaauuaacagcccaauaucuacaaucaaccaacaagucauuauuacccucacugucaaccca
acacaggcaugcucauaaggaaagguuaaaaaaaguaaaaggaacucggcaaaucuuaccccgccuguuuaccaaaaaca
ucaccucuagcaucaccaguauuagaggcaccgccugcccagugacacguuuaacggccgcgguaccgugcaaagguagc
auaaucacuuguuccuuaaauagggaccuguaugaauggcuccacgaggguucagcugucucuuacuuuuaaccagugaa
auugaccugcccgugaagaggcgggcauaacacagcaagacgagaagacccuauggagcuuuaauuuauuaaugcaaaca
ccugcauuaaaaauuucgguuggggcgaccucggagcagaacccaaccuccgagcaguacaugcuaagacuucaccaguc
aaagcgaaccucaauugauccaauaacuugaccaacggaacaaguuacccuagggauaacagcgcaauccuauucuagag
uccauaucaacaauaggguuuacgaccucgauguuggaucaggacaucccgauggugcagccgcuauuaaagguucguuu
guucaacgauuaaaguccuacgugaucugaguucagaccggaguaauccaggucgguuucuaucuacuuuaauuccuccc
uguacgaaaggacaagagaaauaaggccuacuucacaaagcgccuucccccguaaaugauaucaucucaacuuaguauua
uacccacacccaagaacaggguu

The query sequence (length=1463) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

#	Hit	Hit length	Aligned length	Identity (normalized by query)	Identity (normalized by hit)	Identity (normalized by aligned length)	E-value	Homologs to hit
1	7of4:A	1463	1463	1.0000	1.0000	1.0000	0.0	7of6:A
2	7a5h:A	1457	1473	0.9877	0.9918	0.9810	0.0
3	7oid:A	1472	1484	0.9918	0.9857	0.9778	0.0	7oie:A
4	3j7y:A	1472	1485	0.9911	0.9851	0.9764	0.0	3j9m:A, 6nu2:A, 6nu3:A
5	5ool:A	1441	1467	0.9809	0.9958	0.9782	0.0
6	7a5i:A3	1485	1498	0.9911	0.9764	0.9680	0.0
7	6zsa:XA	1499	1507	0.9945	0.9706	0.9655	0.0	6zsb:XA, 6zsd:XA, 6zse:XA, 6zsg:XA
8	8k2a:L1	1500	1506	0.9938	0.9693	0.9655	0.0	8k2b:L1, 8xt0:L1, 8xt1:L1, 8xt2:L1, 8xt3:L1
9	6i9r:A	1501	1506	0.9938	0.9687	0.9655	0.0
10	7og4:XA	1498	1505	0.9932	0.9700	0.9654	0.0
11	6zs9:XA	1501	1508	0.9945	0.9694	0.9649	0.0
12	6zsc:XA	1500	1508	0.9945	0.9700	0.9649	0.0
13	7l08:A	1527	1526	1.0000	0.9581	0.9587	0.0	7l20:A, 6vlz:A, 6vmi:A
14	6zm6:A	1531	1528	1.0000	0.9556	0.9575	0.0
15	6zm5:A	1534	1531	1.0000	0.9537	0.9556	0.0
16	7pd3:A	1280	1290	0.8660	0.9898	0.9822	0.0
17	7a5j:A	1492	1050	0.7020	0.6883	0.9781	0.0
18	7a5j:A	1492	424	0.2864	0.2808	0.9882	0.0
19	7a5f:A3	1503	1058	0.7054	0.6866	0.9754	0.0	7a5g:A3, 7a5k:A3
20	7a5f:A3	1503	424	0.2864	0.2788	0.9882	0.0	7a5g:A3, 7a5k:A3
21	8any:A	1558	1084	0.7109	0.6675	0.9594	0.0	8oir:B8, 8oit:B8, 7qi4:A, 7qi5:A, 7qi6:A
22	8any:A	1558	437	0.2898	0.2721	0.9703	0.0	8oir:B8, 8oit:B8, 7qi4:A, 7qi5:A, 7qi6:A
23	7of2:A	1410	836	0.5714	0.5929	1.0000	0.0
24	7of2:A	1410	579	0.3930	0.4078	0.9931	0.0
25	7of5:A	1389	836	0.5646	0.5947	0.9880	0.0
26	7of5:A	1389	550	0.3746	0.3945	0.9964	0.0
27	7of3:A	1386	842	0.5673	0.5988	0.9857	0.0
28	7of3:A	1386	551	0.3650	0.3853	0.9691	0.0
29	7oic:A	1383	844	0.5666	0.5994	0.9822	0.0
30	7oic:A	1383	551	0.3705	0.3919	0.9837	0.0
31	8qsj:A	1418	855	0.5707	0.5889	0.9766	0.0
32	8qsj:A	1418	548	0.3589	0.3702	0.9580	0.0
33	7o9k:A	1436	864	0.5735	0.5843	0.9711	0.0
34	7o9k:A	1436	586	0.3964	0.4039	0.9898	0.0
35	7of0:A	1376	842	0.5625	0.5981	0.9774	0.0
36	7of0:A	1376	551	0.3630	0.3859	0.9637	0.0
37	7o9m:A	1454	875	0.5776	0.5812	0.9657	0.0
38	7o9m:A	1454	587	0.3964	0.3989	0.9881	0.0
39	7of7:A	1376	836	0.5578	0.5930	0.9761	0.0
40	7of7:A	1376	550	0.3725	0.3961	0.9909	0.0
41	7odt:A	1453	868	0.5728	0.5767	0.9654	0.0
42	7odt:A	1453	589	0.3923	0.3950	0.9745	0.0
43	7ods:A	1445	868	0.5728	0.5799	0.9654	0.0
44	7ods:A	1445	555	0.3664	0.3709	0.9658	0.0
45	7odr:A	1448	868	0.5728	0.5787	0.9654	0.0
46	7odr:A	1448	556	0.3671	0.3709	0.9658	0.0
47	8pk0:A	1423	867	0.5680	0.5840	0.9585	0.0
48	8pk0:A	1423	555	0.3561	0.3661	0.9387	0.0
49	7po4:A	1145	856	0.5373	0.6865	0.9182	0.0
50	7po4:A	1145	130	0.0834	0.1066	0.9385	3.93e-48
51	7po4:A	1145	111	0.0738	0.0943	0.9730	5.08e-47
52	7po4:A	1145	82	0.0513	0.0655	0.9146	4.07e-23
53	5aj4:BA	1515	1403	0.7697	0.7432	0.8026	0.0	4v19:A
54	7nqh:BA	1544	1424	0.7738	0.7332	0.7949	0.0	7nql:BA, 7nsh:BA, 7nsi:BA, 7nsj:BA, 6ydp:BA, 6ydw:BA
55	6gaw:BA	1549	1429	0.7751	0.7321	0.7936	0.0	6gb2:BA
56	7oi8:A	1092	482	0.3213	0.4304	0.9751	0.0	7oi9:A, 7oia:A, 7oib:A, 5oom:A
57	7oi8:A	1092	243	0.1620	0.2170	0.9753	7.70e-115	7oi9:A, 7oia:A, 7oib:A, 5oom:A
58	7oi8:A	1092	250	0.1606	0.2152	0.9400	6.08e-101	7oi9:A, 7oia:A, 7oib:A, 5oom:A
59	7oi8:A	1092	123	0.0766	0.1026	0.9106	3.98e-38	7oi9:A, 7oia:A, 7oib:A, 5oom:A
60	7oi8:A	1092	34	0.0232	0.0311	1.0000	2.48e-10	7oi9:A, 7oia:A, 7oib:A, 5oom:A
61	7oi7:A	1054	482	0.3213	0.4459	0.9751	0.0
62	7oi7:A	1054	250	0.1606	0.2230	0.9400	6.08e-101
63	7oi7:A	1054	125	0.0813	0.1129	0.9520	3.04e-49
64	7oi7:A	1054	123	0.0766	0.1063	0.9106	3.98e-38
65	7oi7:A	1054	81	0.0554	0.0769	1.0000	1.85e-36
66	7oi7:A	1054	34	0.0232	0.0323	1.0000	2.48e-10
67	7oi6:A	1208	482	0.3213	0.3891	0.9751	0.0
68	7oi6:A	1208	381	0.2413	0.2922	0.9265	9.48e-149
69	7oi6:A	1208	250	0.1606	0.1945	0.9400	6.08e-101
70	7oi6:A	1208	123	0.0766	0.0927	0.9106	3.98e-38
71	7oi6:A	1208	34	0.0232	0.0281	1.0000	2.48e-10
72	7qh7:A	1256	470	0.3103	0.3615	0.9660	0.0
73	7qh7:A	1256	551	0.3377	0.3933	0.8966	0.0
74	7qh7:A	1256	303	0.2016	0.2349	0.9736	2.65e-144
75	8qu5:A	1049	450	0.2994	0.4175	0.9733	0.0
76	8qu5:A	1049	243	0.1620	0.2259	0.9753	7.70e-115
77	8qu5:A	1049	237	0.1517	0.2116	0.9367	1.02e-93
78	8qu5:A	1049	123	0.0766	0.1068	0.9106	3.98e-38
79	8qu5:A	1049	34	0.0232	0.0324	1.0000	2.48e-10
80	4ce4:A	1444	781	0.4457	0.4515	0.8348	0.0
81	8qu1:A	938	451	0.2925	0.4563	0.9490	0.0
82	8qu1:A	938	173	0.1128	0.1759	0.9538	4.90e-72
83	8qu1:A	938	122	0.0793	0.1237	0.9508	1.41e-47
84	8qu1:A	938	123	0.0766	0.1194	0.9106	3.98e-38
85	8qu1:A	938	34	0.0232	0.0362	1.0000	2.48e-10
86	8qu1:A	938	32	0.0219	0.0341	1.0000	3.21e-09
87	8oin:B8	1571	1024	0.5496	0.5118	0.7852	2.54e-174	8oiq:B8
88	8oin:B8	1571	271	0.1688	0.1572	0.9114	1.69e-101	8oiq:B8
89	7qh6:A	1133	260	0.1777	0.2295	1.0000	5.79e-136
90	7qh6:A	1133	302	0.1969	0.2542	0.9536	4.50e-132
91	7qh6:A	1133	251	0.1668	0.2154	0.9721	4.60e-117
92	7qh6:A	1133	188	0.1258	0.1624	0.9787	3.71e-88
93	7qh6:A	1133	153	0.0991	0.1280	0.9477	6.43e-61

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