Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>rna
gcuaaaccuagccccaaacccacuccaccuuacuaccagacaaccuuagccaaaccauuuacccaaauaaaguauaggcg
auagaaauugaaaccuggcgcaauagauauaguaccgcaagggaaagaugaaaaauuauaaccaagcauaauauagcaag
gacuaaccccuauaccuucugcauaaugaauuaacuagaaauaacuuugcaaggagagccaaagcuaagacccccgaaac
cagacgagcuaccuaagaacagcuaaaagagcacacccgucuauguagcaaaauagugggaagauuuauagguagaggcg
acaaaccuaccgagccuggugauagcugguuguccaagauagaaucuuaguucaacuuuaaauuugcccacagaacccuc
uaaauccccuuguaaauuuaacuguuaguccaaagaggaacagcucuuuggacacuaggaaaaaaccuuguagagagagu
aaaaaauuuaacacccauaguaggccuaaaagcagccaccaauuaagaaagcguucaagcucaacacaaaaaaucccaaa
cauauaacugaacuccucacacccaauuggaccaaucuaucacccuauagaagaacuaauguuaguauaaguaacaugaa
aacauucuccuccgcauaagccugcgucagauuaaaacacugaacugacaauuaacagcccaauaucuacaaucaaccaa
caagucauuauuacccucacugucaacccaacacaggcaugcucauaaggaaagguuaaaaaaaguaaaaggaacucggc
aaaucuuaccccgccuguuuaccaaaaacaucaccucuagcaucaccaguauuagaggcaccgccugcuggcuccacgag
gguucagcugucucuuacuuuuaaccagugaaauugaccugcccgugaagaggcgggcauaacacagcaagacgagaaga
cccuauggagcuuuaauuuauuaaugcaaacagaaaccugcauuaaaaauuucgguuggggcgaccucggagcagaaccc
aaccuccgagcaguacaugcuaagacuucaccagucaaagcgaacacucaauugauccaauaacuugaccaacggaacaa
guuacccuagggacagcgcaauccuauucuagaguccauaucaacaauaggguuuacgaccucguuggaucaggacaucc
cgauggugcagccgcuauuaaagguucguuuguucaacgauuaaaguccuacgugaucugaguucagaccggaguaaucc
aggucgguuucuaucuacuuucaaauuccucccuguacgaaaggacaagagaaauaaggccuacuucacaaagcgccuuc
ccccguaaaugauaucaucucaacuuaguauacccacacccacccaagaacaggguuuuuuuuuuuuuuuuuuuuuuuuu
uuuuuuuu

The query sequence (length=1448) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7odr:A 1448 1448 1.0000 1.0000 1.0000 0.0
2 7ods:A 1445 1447 0.9979 1.0000 0.9986 0.0
3 8qsj:A 1418 1421 0.9558 0.9760 0.9740 0.0
4 7oic:A 1383 1423 0.9489 0.9935 0.9656 0.0
5 7of3:A 1386 1430 0.9448 0.9870 0.9566 0.0
6 7of2:A 1410 1449 0.9496 0.9752 0.9489 0.0
7 7of5:A 1389 1436 0.9427 0.9827 0.9506 0.0
8 7of0:A 1376 1430 0.9378 0.9869 0.9497 0.0
9 7of7:A 1376 1436 0.9337 0.9826 0.9415 0.0
10 7odt:A 1453 868 0.5994 0.5974 1.0000 0.0
11 7odt:A 1453 555 0.3785 0.3772 0.9874 0.0
12 6zm5:A 1534 877 0.5994 0.5658 0.9897 0.0
13 6zm5:A 1534 569 0.3798 0.3585 0.9666 0.0
14 7l08:A 1527 877 0.5994 0.5684 0.9897 0.0 7l20:A, 6vlz:A, 6vmi:A
15 7l08:A 1527 565 0.3791 0.3595 0.9717 0.0 7l20:A, 6vlz:A, 6vmi:A
16 8pk0:A 1423 869 0.5946 0.6051 0.9908 0.0
17 8pk0:A 1423 549 0.3674 0.3739 0.9690 0.0
18 6i9r:A 1501 867 0.5932 0.5723 0.9908 0.0
19 6i9r:A 1501 560 0.3757 0.3624 0.9714 0.0
20 6zm6:A 1531 877 0.5974 0.5650 0.9863 0.0
21 6zm6:A 1531 569 0.3798 0.3592 0.9666 0.0
22 8any:A 1558 877 0.5974 0.5552 0.9863 0.0 8oir:B8, 8oit:B8, 7qi4:A, 7qi5:A, 7qi6:A
23 8any:A 1558 440 0.2935 0.2728 0.9659 0.0 8oir:B8, 8oit:B8, 7qi4:A, 7qi5:A, 7qi6:A
24 8any:A 1558 125 0.0863 0.0802 1.0000 6.37e-61 8oir:B8, 8oit:B8, 7qi4:A, 7qi5:A, 7qi6:A
25 6zs9:XA 1501 868 0.5925 0.5716 0.9885 0.0
26 6zs9:XA 1501 560 0.3750 0.3618 0.9696 0.0
27 6zsc:XA 1500 868 0.5925 0.5720 0.9885 0.0
28 6zsc:XA 1500 560 0.3750 0.3620 0.9696 0.0
29 6zsa:XA 1499 868 0.5919 0.5717 0.9873 0.0 6zsb:XA, 6zsd:XA, 6zse:XA, 6zsg:XA
30 6zsa:XA 1499 560 0.3750 0.3622 0.9696 0.0 6zsb:XA, 6zsd:XA, 6zse:XA, 6zsg:XA
31 7og4:XA 1498 868 0.5919 0.5721 0.9873 0.0
32 7og4:XA 1498 560 0.3750 0.3625 0.9696 0.0
33 7o9m:A 1454 873 0.5912 0.5887 0.9805 0.0
34 7o9m:A 1454 558 0.3764 0.3748 0.9767 0.0
35 8k2a:L1 1500 877 0.5891 0.5687 0.9726 0.0 8k2b:L1, 8xt0:L1, 8xt1:L1, 8xt2:L1, 8xt3:L1
36 8k2a:L1 1500 555 0.3764 0.3633 0.9820 0.0 8k2b:L1, 8xt0:L1, 8xt1:L1, 8xt2:L1, 8xt3:L1
37 7o9k:A 1436 868 0.5829 0.5877 0.9724 0.0
38 7o9k:A 1436 558 0.3757 0.3788 0.9749 0.0
39 7oid:A 1472 868 0.5822 0.5727 0.9712 0.0 7oie:A
40 7oid:A 1472 555 0.3722 0.3662 0.9712 0.0 7oie:A
41 3j7y:A 1472 868 0.5822 0.5727 0.9712 0.0 3j9m:A, 6nu2:A, 6nu3:A
42 3j7y:A 1472 555 0.3722 0.3662 0.9712 0.0 3j9m:A, 6nu2:A, 6nu3:A
43 7a5f:A3 1503 868 0.5822 0.5609 0.9712 0.0 7a5g:A3, 7a5k:A3
44 7a5f:A3 1503 430 0.2866 0.2761 0.9651 0.0 7a5g:A3, 7a5k:A3
45 7a5f:A3 1503 125 0.0863 0.0832 1.0000 6.37e-61 7a5g:A3, 7a5k:A3
46 7of4:A 1463 868 0.5787 0.5728 0.9654 0.0 7of6:A
47 7of4:A 1463 556 0.3709 0.3671 0.9658 0.0 7of6:A
48 7a5i:A3 1485 877 0.5829 0.5684 0.9624 0.0
49 7a5i:A3 1485 555 0.3722 0.3630 0.9712 0.0
50 7pd3:A 1280 868 0.5760 0.6516 0.9608 0.0
51 7pd3:A 1280 369 0.2438 0.2758 0.9566 1.97e-165
52 7po4:A 1145 1012 0.6464 0.8175 0.9249 0.0
53 7po4:A 1145 131 0.0870 0.1100 0.9618 2.98e-54
54 7po4:A 1145 83 0.0518 0.0655 0.9036 5.21e-22
55 5ool:A 1441 868 0.5725 0.5753 0.9551 0.0
56 5ool:A 1441 555 0.3702 0.3720 0.9658 0.0
57 7a5j:A 1492 868 0.5725 0.5556 0.9551 0.0
58 7a5j:A 1492 430 0.2866 0.2782 0.9651 0.0
59 7a5j:A 1492 125 0.0863 0.0838 1.0000 6.37e-61
60 7a5h:A 1457 868 0.5725 0.5690 0.9551 0.0
61 7a5h:A 1457 555 0.3702 0.3679 0.9658 0.0
62 7qh7:A 1256 878 0.5511 0.6354 0.9089 0.0
63 7qh7:A 1256 487 0.3142 0.3623 0.9343 0.0
64 7oi8:A 1092 493 0.3253 0.4313 0.9554 0.0 7oi9:A, 7oia:A, 7oib:A, 5oom:A
65 7oi8:A 1092 248 0.1637 0.2170 0.9556 1.28e-107 7oi9:A, 7oia:A, 7oib:A, 5oom:A
66 7oi8:A 1092 262 0.1664 0.2207 0.9198 6.06e-96 7oi9:A, 7oia:A, 7oib:A, 5oom:A
67 7oi8:A 1092 126 0.0773 0.1026 0.8889 3.07e-34 7oi9:A, 7oia:A, 7oib:A, 5oom:A
68 7oi8:A 1092 34 0.0235 0.0311 1.0000 2.46e-10 7oi9:A, 7oia:A, 7oib:A, 5oom:A
69 7oi7:A 1054 493 0.3253 0.4469 0.9554 0.0
70 7oi7:A 1054 262 0.1664 0.2287 0.9198 6.06e-96
71 7oi7:A 1054 129 0.0822 0.1129 0.9225 1.09e-43
72 7oi7:A 1054 82 0.0559 0.0769 0.9878 8.53e-35
73 7oi7:A 1054 126 0.0773 0.1063 0.8889 3.07e-34
74 7oi7:A 1054 34 0.0235 0.0323 1.0000 2.46e-10
75 7oi6:A 1208 493 0.3253 0.3899 0.9554 0.0
76 7oi6:A 1208 381 0.2431 0.2914 0.9239 1.57e-146
77 7oi6:A 1208 262 0.1664 0.1995 0.9198 6.06e-96
78 7oi6:A 1208 126 0.0773 0.0927 0.8889 3.07e-34
79 7oi6:A 1208 34 0.0235 0.0281 1.0000 2.46e-10
80 7qh6:A 1133 604 0.3798 0.4854 0.9106 0.0
81 7qh6:A 1133 267 0.1699 0.2171 0.9213 1.01e-98
82 7qh6:A 1133 188 0.1271 0.1624 0.9787 3.67e-88
83 7qh6:A 1133 156 0.1001 0.1280 0.9295 1.78e-56
84 8qu5:A 1049 461 0.3032 0.4185 0.9523 0.0
85 8qu5:A 1049 248 0.1637 0.2259 0.9556 1.28e-107
86 8qu5:A 1049 249 0.1575 0.2173 0.9157 1.02e-88
87 8qu5:A 1049 126 0.0773 0.1068 0.8889 3.07e-34
88 8qu5:A 1049 34 0.0235 0.0324 1.0000 2.46e-10
89 8qu1:A 938 462 0.2963 0.4574 0.9286 0.0
90 8qu1:A 938 182 0.1160 0.1791 0.9231 2.27e-65
91 8qu1:A 938 126 0.0801 0.1237 0.9206 5.06e-42
92 8qu1:A 938 126 0.0773 0.1194 0.8889 3.07e-34
93 8qu1:A 938 38 0.0262 0.0405 1.0000 1.47e-12
94 8qu1:A 938 34 0.0235 0.0362 1.0000 2.46e-10
95 8qu1:A 938 33 0.0228 0.0352 1.0000 8.84e-10
96 8oin:B8 1571 844 0.4537 0.4182 0.7784 5.73e-136 8oiq:B8
97 8oin:B8 1571 272 0.1671 0.1540 0.8897 2.19e-90 8oiq:B8
98 8oin:B8 1571 110 0.0656 0.0605 0.8636 1.44e-27 8oiq:B8
99 7nqh:BA 1544 844 0.4537 0.4255 0.7784 5.73e-136 7nql:BA, 7nsh:BA, 7nsi:BA, 7nsj:BA, 6ydp:BA, 6ydw:BA
100 7nqh:BA 1544 513 0.2907 0.2727 0.8207 2.74e-114 7nql:BA, 7nsh:BA, 7nsi:BA, 7nsj:BA, 6ydp:BA, 6ydw:BA
101 6gaw:BA 1549 844 0.4537 0.4241 0.7784 5.73e-136 6gb2:BA
102 6gaw:BA 1549 517 0.2914 0.2724 0.8162 2.13e-110 6gb2:BA
103 5aj4:BA 1515 843 0.4530 0.4330 0.7782 2.66e-134 4v19:A
104 5aj4:BA 1515 500 0.2880 0.2752 0.8340 2.09e-125 4v19:A
105 4ce4:A 1444 507 0.2907 0.2916 0.8304 1.26e-122
106 4ce4:A 1444 341 0.1809 0.1814 0.7683 1.41e-42

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218