>rna
gcuaaaccuagccccaaacccacuccaccuuacuaccagacaaccuuagccaaaccauuuacccaaauaaaguauaggcg
auagaaauugaaaccuggcgcaauagauauaguaccgcaagggaaagaugaaaaauuauaaccaagcauaauauagcaag
gacuaaccccuauaccuucugcauaaugaauuaacuagaaauaacuuugcaaggagagccaaagcuaagacccccgaaac
cagacgagcuaccuaagaacagcuaaaagagcacacccgucuauguagcaaaauagugggaagauuuauagguagaggcg
acaaaccuaccgagccuggugauagcugguuguccaagauagaaucuuaguucaacuuuaaauuugcccacagaacccaa
auccccuuguaaauuuaacuguuaguccaaagaggaacagcucuuuggacacuaggaaaaaaccuuguagagagaguaaa
aaauuuaacacccauaguaggccuaaaagcagccaccaauuaagaaagcguucaagcucaacaccaaaaaucccaaacau
auaacugaacuccucacacccaauuggaccaaucuaucacccuauagaagaacuaauguuaguauaaguaacaugaaaac
auucuccuccgcauaagccugcgucagauaacaacugacaauuaacagcccaauaucuacaaucaaccaacaagucauua
uuacccucacugucaacccaacacaggcaugcucauaaggaaagguuaaaaaaaguaaaaggaacucggcaaaucuuacc
ccgccuguuuaccaaaaacaucaccucuagcaucaccaguauuagaggcaccgccugcccagugacacauguuuaacggc
cgcgguacccuaaccgugcaaagguagcauaaucacuuguuccuuaaauagggaccuguaugaauggcuccacgaggguu
cagcugucucuuacuuuuaaccagugaaauugaccugcccgugaagaggcgggcauaacacagcaagacgagaagacccu
auggagcuuuaauuuauuaaugcaaacaguaaccaaaccugcauuaaaaauuucgguuggggcgaccucggagcagaacc
caaccuccgagcaguacaugcuaagacuucaccagucaaagcgaaccucaauugauccaauaacuugaccaacggaacaa
guuacccuagggauaacagcgcaauccuauucuagaguccauaucaacaauaggguuuacgaccucgauguuggaucagg
acaucccgauggugcagccgcuauuaaagguucguuuguucaacgauuaaaguccuacgugaucugaguucagaccggag
uaauccaggucgguuucuaucuacuuauuccucccuguacgaaaggacaagagaaauaaggccuacuucacaaagcgccu
ucccccguaaaugauaucaucucaacuuagaauacccacacccacccaagaacaggguu

The query sequence (length=1499) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

#	Hit	Hit length	Aligned length	Identity (normalized by query)	Identity (normalized by hit)	Identity (normalized by aligned length)	E-value	Homologs to hit
1	6zsa:XA	1499	1499	1.0000	1.0000	1.0000	0.0	6zsb:XA, 6zsd:XA, 6zse:XA, 6zsg:XA
2	6zsc:XA	1500	1500	1.0000	0.9993	0.9993	0.0
3	7og4:XA	1498	1499	0.9993	1.0000	0.9993	0.0
4	6zs9:XA	1501	1501	1.0000	0.9987	0.9987	0.0
5	6i9r:A	1501	1501	0.9987	0.9973	0.9973	0.0
6	7l08:A	1527	1526	1.0000	0.9817	0.9823	0.0	7l20:A, 6vlz:A, 6vmi:A
7	8k2a:L1	1500	1511	0.9920	0.9913	0.9841	0.0	8k2b:L1, 8xt0:L1, 8xt1:L1, 8xt2:L1, 8xt3:L1
8	6zm6:A	1531	1529	0.9987	0.9778	0.9791	0.0
9	6zm5:A	1534	1532	0.9993	0.9765	0.9778	0.0
10	7oid:A	1472	1500	0.9813	0.9993	0.9807	0.0	7oie:A
11	3j7y:A	1472	1500	0.9807	0.9986	0.9800	0.0	3j9m:A, 6nu2:A, 6nu3:A
12	7a5i:A3	1485	1509	0.9833	0.9926	0.9768	0.0
13	8any:A	1558	1555	1.0000	0.9621	0.9640	0.0	8oir:B8, 8oit:B8, 7qi4:A, 7qi5:A, 7qi6:A
14	7a5f:A3	1503	1526	0.9840	0.9814	0.9666	0.0	7a5g:A3, 7a5k:A3
15	7a5h:A	1457	1500	0.9713	0.9993	0.9707	0.0
16	7of4:A	1463	1507	0.9706	0.9945	0.9655	0.0	7of6:A
17	7a5j:A	1492	1526	0.9773	0.9819	0.9600	0.0
18	5ool:A	1441	1500	0.9606	0.9993	0.9600	0.0
19	7pd3:A	1280	1317	0.8532	0.9992	0.9711	0.0
20	7odt:A	1453	868	0.5717	0.5898	0.9873	0.0
21	7odt:A	1453	594	0.3863	0.3985	0.9747	0.0
22	7ods:A	1445	868	0.5717	0.5931	0.9873	0.0
23	7ods:A	1445	560	0.3609	0.3744	0.9661	0.0
24	7odr:A	1448	868	0.5717	0.5919	0.9873	0.0
25	7odr:A	1448	560	0.3622	0.3750	0.9696	0.0
26	8qsj:A	1418	859	0.5650	0.5973	0.9860	0.0
27	8qsj:A	1418	556	0.3522	0.3724	0.9496	0.0
28	7o9m:A	1454	885	0.5764	0.5942	0.9763	0.0
29	7o9m:A	1454	596	0.3863	0.3982	0.9715	0.0
30	8pk0:A	1423	868	0.5670	0.5973	0.9793	0.0
31	8pk0:A	1423	560	0.3509	0.3696	0.9393	0.0
32	7oic:A	1383	856	0.5577	0.6045	0.9766	0.0
33	7oic:A	1383	556	0.3636	0.3941	0.9802	0.0
34	7of3:A	1386	856	0.5577	0.6032	0.9766	0.0
35	7of3:A	1386	561	0.3549	0.3838	0.9483	0.0
36	7o9k:A	1436	879	0.5684	0.5933	0.9693	0.0
37	7o9k:A	1436	595	0.3863	0.4032	0.9731	0.0
38	7of2:A	1410	859	0.5557	0.5908	0.9697	0.0
39	7of2:A	1410	592	0.3803	0.4043	0.9628	0.0
40	7of0:A	1376	856	0.5530	0.6025	0.9685	0.0
41	7of0:A	1376	561	0.3529	0.3844	0.9430	0.0
42	7of5:A	1389	856	0.5510	0.5947	0.9650	0.0
43	7of5:A	1389	561	0.3636	0.3924	0.9715	0.0
44	7of7:A	1376	856	0.5444	0.5930	0.9533	0.0
45	7of7:A	1376	561	0.3616	0.3939	0.9661	0.0
46	7po4:A	1145	857	0.5364	0.7022	0.9382	0.0
47	7po4:A	1145	132	0.0854	0.1118	0.9697	5.13e-57
48	7po4:A	1145	130	0.0807	0.1057	0.9308	6.74e-46
49	7po4:A	1145	82	0.0500	0.0655	0.9146	4.17e-23
50	5aj4:BA	1515	1425	0.7672	0.7591	0.8070	0.0	4v19:A
51	7nqh:BA	1544	1437	0.7705	0.7481	0.8038	0.0	7nql:BA, 7nsh:BA, 7nsi:BA, 7nsj:BA, 6ydp:BA, 6ydw:BA
52	6gaw:BA	1549	1441	0.7718	0.7469	0.8029	0.0	6gb2:BA
53	7oi8:A	1092	483	0.3149	0.4322	0.9772	0.0	7oi9:A, 7oia:A, 7oib:A, 5oom:A
54	7oi8:A	1092	252	0.1581	0.2170	0.9405	4.82e-102	7oi9:A, 7oia:A, 7oib:A, 5oom:A
55	7oi8:A	1092	262	0.1608	0.2207	0.9198	6.28e-96	7oi9:A, 7oia:A, 7oib:A, 5oom:A
56	7oi8:A	1092	123	0.0740	0.1016	0.9024	1.90e-36	7oi9:A, 7oia:A, 7oib:A, 5oom:A
57	7oi8:A	1092	34	0.0227	0.0311	1.0000	2.55e-10	7oi9:A, 7oia:A, 7oib:A, 5oom:A
58	7oi7:A	1054	483	0.3149	0.4478	0.9772	0.0
59	7oi7:A	1054	262	0.1608	0.2287	0.9198	6.28e-96
60	7oi7:A	1054	108	0.0680	0.0968	0.9444	8.78e-40
61	7oi7:A	1054	81	0.0540	0.0769	1.0000	1.90e-36
62	7oi7:A	1054	123	0.0740	0.1053	0.9024	1.90e-36
63	7oi7:A	1054	34	0.0227	0.0323	1.0000	2.55e-10
64	7oi6:A	1208	483	0.3149	0.3907	0.9772	0.0
65	7oi6:A	1208	539	0.3095	0.3841	0.8609	2.10e-145
66	7oi6:A	1208	262	0.1608	0.1995	0.9198	6.28e-96
67	7oi6:A	1208	34	0.0227	0.0281	1.0000	2.55e-10
68	8qu5:A	1049	451	0.2935	0.4194	0.9756	0.0
69	8qu5:A	1049	252	0.1581	0.2259	0.9405	4.82e-102
70	8qu5:A	1049	249	0.1521	0.2173	0.9157	1.06e-88
71	8qu5:A	1049	123	0.0740	0.1058	0.9024	1.90e-36
72	8qu5:A	1049	34	0.0227	0.0324	1.0000	2.55e-10
73	4ce4:A	1444	914	0.5010	0.5201	0.8217	0.0
74	7qh7:A	1256	484	0.3035	0.3623	0.9401	0.0
75	7qh7:A	1256	559	0.3322	0.3965	0.8909	0.0
76	7qh7:A	1256	307	0.1968	0.2349	0.9609	9.85e-139
77	8oin:B8	1571	1060	0.5610	0.5353	0.7934	0.0	8oiq:B8
78	8oin:B8	1571	271	0.1641	0.1566	0.9077	2.90e-99	8oiq:B8
79	8qu1:A	938	452	0.2862	0.4574	0.9491	0.0
80	8qu1:A	938	182	0.1121	0.1791	0.9231	2.36e-65
81	8qu1:A	938	108	0.0680	0.1087	0.9444	8.78e-40
82	8qu1:A	938	123	0.0740	0.1183	0.9024	1.90e-36
83	8qu1:A	938	38	0.0254	0.0405	1.0000	1.52e-12
84	8qu1:A	938	34	0.0227	0.0362	1.0000	2.55e-10
85	8qu1:A	938	32	0.0213	0.0341	1.0000	3.29e-09
86	7qh6:A	1133	306	0.1921	0.2542	0.9412	1.67e-126
87	7qh6:A	1133	269	0.1734	0.2295	0.9665	3.62e-123
88	7qh6:A	1133	267	0.1641	0.2171	0.9213	1.04e-98
89	7qh6:A	1133	185	0.1227	0.1624	0.9946	4.89e-92
90	7qh6:A	1133	153	0.0961	0.1271	0.9412	1.10e-58

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