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BioLiP
>rna
gcuaaaccuagccccaaacccacuccaccuuacuaccagacaaccuuagccaaaccauuuacccaaauaaaguauaggcg
auagaaauugaaaccuggcgcaauagauauaguaccgcaagggaaagaugaaaaauaccaagcauaauauagcaaggacu
aaccccuauaccuucugcauaaugaauuaacuagaaauaacuuugcaaggagagccaaagcuaagacccccgaaaccaga
cgagcuaccuaagaacagcuaaaagagcacacccgucuauguagcaaaauagugggaagauuuauagguagaggcgacaa
accuaccgagccuggugauagcugguuguccaagauagaaucuuaguucaacuuuaaauuugcccacagaacccucuaaa
uccccuuguaaauuuaacuguuaguccaaagaggaacagcucuuuggacacuaggaaaaaaccuuguagagagaguaaaa
aauuuaacacccauaguaggccuaaaagcagccaccaauuaagaaagcguucaagcucaacacaaaaaaucccaaacaua
uaacugaacuccucacacccaauuggaccaaucuaucacccuauagaagaacuaauguuaguauaaguaacaugaaaaca
uucuccuccgcauaagccugcgucagacacugaacugacaauuaacagcccaauaucuacaaucaaccaacaagucauua
uuacccucacugucaacccaacacaggcaugcucauaaggaaagguuaaaaaaaguaaaaggaacucggcaaaucuuacc
ccgccuguuuaccaaaaacaucaccucuagcaucaccaguauuagaggcaccgccgcuccacgaggguucagcugucucu
uacuuuuaaccagugaaauugaccugcccgugaagaggcgggcauaacacagcaagacgagaagacccuauggagcuuua
auuuauuaaugcaaacaaccugcauuaaaaauuucgguuggggcgaccucggagcagaacccaaccuccgagcaguacau
gcuaagacuucaccagucaaagcgaacacucaauugauccaauaacuugaccaacggaacaaguuacccuagggauaaca
gcgcaauccuauucuagaguccauaucaacaauagggcgaccucgauggaucaggacaucccgauggugcagccgcuauu
aaagguucguuuaacgauuaaaguccuacgugaucugaguucagaccggaguaauccaggucgguuucuaucuacuuaaa
uuccucccuguacgaaaggacaagagaaauaaggccuacuucacaaagcgccuucccccguaaaugauucucaacuuagu
auacccaccccacccaagaacaggguuuauauauauauauauauauauauauauauau

The query sequence (length=1418) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8qsj:A 1418 1418 1.0000 1.0000 1.0000 0.0
2 7odr:A 1448 1421 0.9760 0.9558 0.9740 0.0
3 7ods:A 1445 1420 0.9753 0.9571 0.9739 0.0
4 7oic:A 1383 1408 0.9584 0.9826 0.9652 0.0
5 7of3:A 1386 1419 0.9528 0.9747 0.9521 0.0
6 7of5:A 1389 1422 0.9535 0.9734 0.9508 0.0
7 7of0:A 1376 1419 0.9457 0.9746 0.9450 0.0
8 7of7:A 1376 1422 0.9443 0.9731 0.9416 0.0
9 7odt:A 1453 865 0.6030 0.5884 0.9884 0.0
10 7odt:A 1453 552 0.3752 0.3661 0.9638 0.0
11 7o9m:A 1454 862 0.6001 0.5853 0.9872 0.0
12 7o9m:A 1454 553 0.3745 0.3652 0.9602 0.0
13 6i9r:A 1501 859 0.5980 0.5650 0.9872 0.0
14 6i9r:A 1501 556 0.3731 0.3524 0.9514 0.0
15 6zs9:XA 1501 859 0.5973 0.5643 0.9860 0.0
16 6zs9:XA 1501 556 0.3724 0.3518 0.9496 0.0
17 6zsc:XA 1500 859 0.5973 0.5647 0.9860 0.0
18 6zsc:XA 1500 556 0.3724 0.3520 0.9496 0.0
19 6zsa:XA 1499 859 0.5973 0.5650 0.9860 0.0 6zsb:XA, 6zsd:XA, 6zse:XA, 6zsg:XA
20 6zsa:XA 1499 556 0.3724 0.3522 0.9496 0.0 6zsb:XA, 6zsd:XA, 6zse:XA, 6zsg:XA
21 7og4:XA 1498 859 0.5973 0.5654 0.9860 0.0
22 7og4:XA 1498 556 0.3724 0.3525 0.9496 0.0
23 6zm6:A 1531 871 0.6016 0.5572 0.9793 0.0
24 6zm6:A 1531 567 0.3759 0.3481 0.9400 0.0
25 6zm5:A 1534 874 0.6030 0.5574 0.9783 0.0
26 6zm5:A 1534 567 0.3759 0.3475 0.9400 0.0
27 7l08:A 1527 874 0.6030 0.5599 0.9783 0.0 7l20:A, 6vlz:A, 6vmi:A
28 7l08:A 1527 563 0.3752 0.3484 0.9449 0.0 7l20:A, 6vlz:A, 6vmi:A
29 8any:A 1558 871 0.6008 0.5469 0.9782 0.0 8oir:B8, 8oit:B8, 7qi4:A, 7qi5:A, 7qi6:A
30 8any:A 1558 439 0.2906 0.2644 0.9385 0.0 8oir:B8, 8oit:B8, 7qi4:A, 7qi5:A, 7qi6:A
31 8any:A 1558 122 0.0860 0.0783 1.0000 2.90e-59 8oir:B8, 8oit:B8, 7qi4:A, 7qi5:A, 7qi6:A
32 8pk0:A 1423 869 0.5994 0.5973 0.9781 0.0
33 8pk0:A 1423 545 0.3632 0.3619 0.9450 0.0
34 7o9k:A 1436 856 0.5924 0.5850 0.9813 0.0
35 7o9k:A 1436 553 0.3738 0.3691 0.9584 0.0
36 7of4:A 1463 855 0.5889 0.5707 0.9766 0.0 7of6:A
37 7of4:A 1463 548 0.3702 0.3589 0.9580 0.0 7of6:A
38 7of2:A 1410 855 0.5889 0.5922 0.9766 0.0
39 7of2:A 1410 548 0.3702 0.3723 0.9580 0.0
40 8k2a:L1 1500 869 0.5959 0.5633 0.9724 0.0 8k2b:L1, 8xt0:L1, 8xt1:L1, 8xt2:L1, 8xt3:L1
41 8k2a:L1 1500 552 0.3738 0.3533 0.9601 0.0 8k2b:L1, 8xt0:L1, 8xt1:L1, 8xt2:L1, 8xt3:L1
42 7oid:A 1472 859 0.5896 0.5679 0.9732 0.0 7oie:A
43 7oid:A 1472 550 0.3702 0.3567 0.9545 0.0 7oie:A
44 3j7y:A 1472 860 0.5889 0.5673 0.9709 0.0 3j9m:A, 6nu2:A, 6nu3:A
45 3j7y:A 1472 550 0.3702 0.3567 0.9545 0.0 3j9m:A, 6nu2:A, 6nu3:A
46 7a5f:A3 1503 860 0.5889 0.5556 0.9709 0.0 7a5g:A3, 7a5k:A3
47 7a5f:A3 1503 426 0.2849 0.2688 0.9484 0.0 7a5g:A3, 7a5k:A3
48 7a5f:A3 1503 122 0.0860 0.0812 1.0000 2.90e-59 7a5g:A3, 7a5k:A3
49 7pd3:A 1280 855 0.5860 0.6492 0.9719 0.0
50 7pd3:A 1280 364 0.2468 0.2734 0.9615 1.49e-166
51 5ool:A 1441 855 0.5825 0.5732 0.9661 0.0
52 5ool:A 1441 547 0.3695 0.3636 0.9580 0.0
53 7a5j:A 1492 855 0.5825 0.5536 0.9661 0.0
54 7a5j:A 1492 426 0.2849 0.2708 0.9484 0.0
55 7a5j:A 1492 122 0.0860 0.0818 1.0000 2.90e-59
56 7a5i:A3 1485 869 0.5896 0.5630 0.9620 0.0
57 7a5i:A3 1485 550 0.3702 0.3535 0.9545 0.0
58 7a5h:A 1457 855 0.5825 0.5669 0.9661 0.0
59 7a5h:A 1457 547 0.3695 0.3596 0.9580 0.0
60 7po4:A 1145 984 0.6425 0.7956 0.9258 0.0
61 7po4:A 1145 131 0.0839 0.1039 0.9084 6.41e-41
62 7po4:A 1145 83 0.0529 0.0655 0.9036 5.10e-22
63 7qh7:A 1256 866 0.5501 0.6210 0.9007 0.0
64 7qh7:A 1256 483 0.3209 0.3623 0.9420 0.0
65 7qh6:A 1133 590 0.3900 0.4881 0.9373 0.0
66 7qh6:A 1133 263 0.1735 0.2171 0.9354 2.72e-104
67 7qh6:A 1133 188 0.1298 0.1624 0.9787 3.60e-88
68 7qh6:A 1133 153 0.0987 0.1236 0.9150 1.76e-51
69 7oi8:A 1092 487 0.3315 0.4304 0.9651 0.0 7oi9:A, 7oia:A, 7oib:A, 5oom:A
70 7oi8:A 1092 245 0.1671 0.2170 0.9673 4.49e-112 7oi9:A, 7oia:A, 7oib:A, 5oom:A
71 7oi8:A 1092 258 0.1700 0.2207 0.9341 1.64e-101 7oi9:A, 7oia:A, 7oib:A, 5oom:A
72 7oi8:A 1092 123 0.0755 0.0980 0.8699 1.09e-28 7oi9:A, 7oia:A, 7oib:A, 5oom:A
73 7oi8:A 1092 34 0.0240 0.0311 1.0000 2.41e-10 7oi9:A, 7oia:A, 7oib:A, 5oom:A
74 7oi7:A 1054 487 0.3315 0.4459 0.9651 0.0
75 7oi7:A 1054 258 0.1700 0.2287 0.9341 1.64e-101
76 7oi7:A 1054 126 0.0839 0.1129 0.9444 1.37e-47
77 7oi7:A 1054 82 0.0571 0.0769 0.9878 8.35e-35
78 7oi7:A 1054 123 0.0755 0.1015 0.8699 1.09e-28
79 7oi7:A 1054 34 0.0240 0.0323 1.0000 2.41e-10
80 7oi6:A 1208 487 0.3315 0.3891 0.9651 0.0
81 7oi6:A 1208 381 0.2419 0.2839 0.9003 2.63e-129
82 7oi6:A 1208 258 0.1700 0.1995 0.9341 1.64e-101
83 7oi6:A 1208 123 0.0755 0.0886 0.8699 1.09e-28
84 7oi6:A 1208 34 0.0240 0.0281 1.0000 2.41e-10
85 8qu5:A 1049 455 0.3089 0.4175 0.9626 0.0
86 8qu5:A 1049 245 0.1671 0.2259 0.9673 4.49e-112
87 8qu5:A 1049 245 0.1608 0.2173 0.9306 2.76e-94
88 8qu5:A 1049 123 0.0755 0.1020 0.8699 1.09e-28
89 8qu5:A 1049 34 0.0240 0.0324 1.0000 2.41e-10
90 8qu1:A 938 456 0.3018 0.4563 0.9386 0.0
91 8qu1:A 938 178 0.1185 0.1791 0.9438 6.14e-71
92 8qu1:A 938 123 0.0818 0.1237 0.9431 6.37e-46
93 8qu1:A 938 123 0.0755 0.1141 0.8699 1.09e-28
94 8qu1:A 938 38 0.0268 0.0405 1.0000 1.44e-12
95 8qu1:A 938 34 0.0240 0.0362 1.0000 2.41e-10
96 8qu1:A 938 33 0.0233 0.0352 1.0000 8.65e-10
97 5aj4:BA 1515 830 0.4563 0.4271 0.7795 9.38e-134 4v19:A
98 5aj4:BA 1515 492 0.2870 0.2686 0.8272 5.77e-116 4v19:A
99 8oin:B8 1571 834 0.4570 0.4125 0.7770 2.03e-130 8oiq:B8
100 8oin:B8 1571 271 0.1671 0.1509 0.8745 1.68e-81 8oiq:B8
101 8oin:B8 1571 104 0.0642 0.0579 0.8750 1.41e-27 8oiq:B8
102 7nqh:BA 1544 834 0.4570 0.4197 0.7770 2.03e-130 7nql:BA, 7nsh:BA, 7nsi:BA, 7nsj:BA, 6ydp:BA, 6ydw:BA
103 7nqh:BA 1544 505 0.2898 0.2662 0.8139 7.56e-105 7nql:BA, 7nsh:BA, 7nsi:BA, 7nsj:BA, 6ydp:BA, 6ydw:BA
104 6gaw:BA 1549 834 0.4570 0.4183 0.7770 2.03e-130 6gb2:BA
105 6gaw:BA 1549 510 0.2913 0.2666 0.8098 5.89e-101 6gb2:BA
106 4ce4:A 1444 499 0.2898 0.2846 0.8236 3.47e-113
107 4ce4:A 1444 331 0.1791 0.1759 0.7674 8.29e-40

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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