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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>rna
gcuaaaccuagccccaaacccacuccaccuuacuaccaaaccuuagccaaaccauuuacauaaaguauaggcgauagaaa
uugggcgcaauagauauaguaccgcaagggaaagaugaaaaauaccaagcauaauauagcaaggacuaaccccuauaccu
ucugaugaauuaacuagaaauaacuuugcaaggagagccaaagcuaagacccccgaaaccagacgagcgccuggugauag
cugguuguccaagauagaaucuuaguucaacuuuaaauuugcccacagaaccaaauccccuuguaaauuuaacuguuagu
ccaaagaggaacagcucuuuggacacuaggaaaaaaccuuguagagagaguaaaaaauuuaacacccauaguaggccuaa
aagcagccaccaauuaagaaagcguucaagcucaacaccucccaaacauauaacugaacuccucacacccaauuggacca
aucuaucacccuauagaagaacuaauguuaguauaaguaacaugaaaacauucuccuccgcauaagccugcgucagauca
cugacaauuaacagcccaauaucuacaaucaaccaacaagucauuauuacccucacugucaacccaacaggcaugcucau
aaggaaagguuaaaaaaaguaaaaggaaacaucaccucuagcaucaccaguauuagaggccagcugucucuuacuuuuaa
ccagugaaauugaccugcccgugaggcgggcauaacacagcaagacgagacccuauggagcuuuaauuuauuaaugcaaa
caccugcauuaaaaauuucgguuggggcgaccucggagcagaacccaaccuccgagcaguacaugcuaagacuucaccag
ucaaagcgaaccucaauugauccaauaacuugaccaacggaacaaguuacccuaggguaucuacuuuauuccucccugua
cgaaaggacaagagaaauaaggccuacuucacaaagcgccuucuaaaugauaucaucucaacuuaauacccacacccaag
aacaggguu

The query sequence (length=1049) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8qu5:A 1049 1049 1.0000 1.0000 1.0000 0.0
2 7oi8:A 1092 821 0.7827 0.7518 1.0000 0.0 7oi9:A, 7oia:A, 7oib:A, 5oom:A
3 7oi8:A 1092 228 0.2173 0.2088 1.0000 2.54e-118 7oi9:A, 7oia:A, 7oib:A, 5oom:A
4 8qu1:A 938 757 0.7083 0.7921 0.9815 0.0
5 8qu1:A 938 130 0.1230 0.1375 0.9923 1.28e-61
6 8qu1:A 938 39 0.0372 0.0416 1.0000 2.95e-13
7 8qu1:A 938 32 0.0305 0.0341 1.0000 2.30e-09
8 7oi6:A 1208 709 0.6625 0.5753 0.9803 0.0
9 7oi6:A 1208 228 0.2173 0.1887 1.0000 2.54e-118
10 7oi6:A 1208 112 0.1068 0.0927 1.0000 7.75e-54
11 7oi7:A 1054 591 0.5634 0.5607 1.0000 0.0
12 7oi7:A 1054 228 0.2173 0.2163 1.0000 2.54e-118
13 7oi7:A 1054 193 0.1840 0.1831 1.0000 7.27e-99
14 7po4:A 1145 615 0.5453 0.4996 0.9301 0.0
15 7po4:A 1145 249 0.2173 0.1991 0.9157 7.37e-89
16 7po4:A 1145 210 0.1783 0.1633 0.8905 7.64e-64
17 7oid:A 1472 447 0.4185 0.2982 0.9821 0.0 7oie:A
18 7oid:A 1472 247 0.2259 0.1610 0.9595 1.99e-109 7oie:A
19 7oid:A 1472 242 0.2173 0.1549 0.9421 7.27e-99 7oie:A
20 7oid:A 1472 118 0.1068 0.0761 0.9492 1.69e-45 7oie:A
21 7oid:A 1472 34 0.0324 0.0231 1.0000 1.77e-10 7oie:A
22 7oic:A 1383 447 0.4185 0.3174 0.9821 0.0
23 7oic:A 1383 247 0.2259 0.1714 0.9595 1.99e-109
24 7oic:A 1383 239 0.2135 0.1620 0.9372 5.66e-95
25 7oic:A 1383 118 0.1068 0.0810 0.9492 1.69e-45
26 7oic:A 1383 34 0.0324 0.0246 1.0000 1.77e-10
27 3j7y:A 1472 449 0.4194 0.2989 0.9800 0.0 3j9m:A, 6nu2:A, 6nu3:A
28 3j7y:A 1472 247 0.2259 0.1610 0.9595 1.99e-109 3j9m:A, 6nu2:A, 6nu3:A
29 3j7y:A 1472 239 0.2173 0.1549 0.9540 9.34e-103 3j9m:A, 6nu2:A, 6nu3:A
30 3j7y:A 1472 118 0.1068 0.0761 0.9492 1.69e-45 3j9m:A, 6nu2:A, 6nu3:A
31 3j7y:A 1472 34 0.0324 0.0231 1.0000 1.77e-10 3j9m:A, 6nu2:A, 6nu3:A
32 7a5f:A3 1503 449 0.4194 0.2927 0.9800 0.0 7a5g:A3, 7a5k:A3
33 7a5f:A3 1503 239 0.2173 0.1517 0.9540 9.34e-103 7a5g:A3, 7a5k:A3
34 7a5f:A3 1503 136 0.1296 0.0905 1.0000 3.53e-67 7a5g:A3, 7a5k:A3
35 7a5f:A3 1503 118 0.1068 0.0745 0.9492 1.69e-45 7a5g:A3, 7a5k:A3
36 7a5f:A3 1503 108 0.0972 0.0679 0.9444 6.12e-40 7a5g:A3, 7a5k:A3
37 7a5f:A3 1503 34 0.0324 0.0226 1.0000 1.77e-10 7a5g:A3, 7a5k:A3
38 7of3:A 1386 447 0.4175 0.3160 0.9799 0.0
39 7of3:A 1386 242 0.2259 0.1710 0.9793 4.25e-116
40 7of3:A 1386 241 0.2107 0.1595 0.9170 1.23e-86
41 7of3:A 1386 125 0.1068 0.0808 0.8960 1.71e-35
42 7of3:A 1386 34 0.0324 0.0245 1.0000 1.77e-10
43 7of0:A 1376 447 0.4175 0.3183 0.9799 0.0
44 7of0:A 1376 242 0.2231 0.1701 0.9669 1.54e-110
45 7of0:A 1376 241 0.2040 0.1555 0.8880 9.74e-73
46 7of0:A 1376 125 0.1068 0.0814 0.8960 1.71e-35
47 7of0:A 1376 34 0.0324 0.0247 1.0000 1.77e-10
48 6zsa:XA 1499 451 0.4194 0.2935 0.9756 0.0 6zsb:XA, 6zsd:XA, 6zse:XA, 6zsg:XA
49 6zsa:XA 1499 252 0.2259 0.1581 0.9405 3.36e-102 6zsb:XA, 6zsd:XA, 6zse:XA, 6zsg:XA
50 6zsa:XA 1499 249 0.2173 0.1521 0.9157 7.37e-89 6zsb:XA, 6zsd:XA, 6zse:XA, 6zsg:XA
51 6zsa:XA 1499 123 0.1058 0.0740 0.9024 1.32e-36 6zsb:XA, 6zsd:XA, 6zse:XA, 6zsg:XA
52 6zsa:XA 1499 34 0.0324 0.0227 1.0000 1.77e-10 6zsb:XA, 6zsd:XA, 6zse:XA, 6zsg:XA
53 7pd3:A 1280 446 0.4156 0.3406 0.9776 0.0
54 7pd3:A 1280 243 0.2221 0.1820 0.9588 3.33e-107
55 7pd3:A 1280 235 0.2135 0.1750 0.9532 1.56e-100
56 7pd3:A 1280 34 0.0324 0.0266 1.0000 1.77e-10
57 5ool:A 1441 446 0.4156 0.3026 0.9776 0.0
58 5ool:A 1441 243 0.2259 0.1645 0.9753 5.50e-115
59 5ool:A 1441 232 0.2135 0.1554 0.9655 5.58e-105
60 5ool:A 1441 118 0.1068 0.0777 0.9492 1.69e-45
61 5ool:A 1441 34 0.0324 0.0236 1.0000 1.77e-10
62 7og4:XA 1498 451 0.4194 0.2937 0.9756 0.0
63 7og4:XA 1498 252 0.2259 0.1582 0.9405 3.36e-102
64 7og4:XA 1498 249 0.2173 0.1522 0.9157 7.37e-89
65 7og4:XA 1498 122 0.1058 0.0741 0.9098 1.02e-37
66 7og4:XA 1498 34 0.0324 0.0227 1.0000 1.77e-10
67 7a5j:A 1492 446 0.4156 0.2922 0.9776 0.0
68 7a5j:A 1492 232 0.2135 0.1501 0.9655 5.58e-105
69 7a5j:A 1492 136 0.1296 0.0912 1.0000 3.53e-67
70 7a5j:A 1492 118 0.1068 0.0751 0.9492 1.69e-45
71 7a5j:A 1492 108 0.0972 0.0684 0.9444 6.12e-40
72 7a5j:A 1492 34 0.0324 0.0228 1.0000 1.77e-10
73 7a5h:A 1457 446 0.4156 0.2992 0.9776 0.0
74 7a5h:A 1457 243 0.2259 0.1627 0.9753 5.50e-115
75 7a5h:A 1457 232 0.2135 0.1537 0.9655 5.58e-105
76 7a5h:A 1457 118 0.1068 0.0769 0.9492 1.69e-45
77 7a5h:A 1457 34 0.0324 0.0233 1.0000 1.77e-10
78 6zsc:XA 1500 452 0.4194 0.2933 0.9735 0.0
79 6zsc:XA 1500 252 0.2259 0.1580 0.9405 3.36e-102
80 6zsc:XA 1500 249 0.2173 0.1520 0.9157 7.37e-89
81 6zsc:XA 1500 123 0.1058 0.0740 0.9024 1.32e-36
82 6zsc:XA 1500 34 0.0324 0.0227 1.0000 1.77e-10
83 7of4:A 1463 450 0.4175 0.2994 0.9733 0.0 7of6:A
84 7of4:A 1463 243 0.2259 0.1620 0.9753 5.50e-115 7of6:A
85 7of4:A 1463 237 0.2116 0.1517 0.9367 7.32e-94 7of6:A
86 7of4:A 1463 123 0.1068 0.0766 0.9106 2.85e-38 7of6:A
87 7of4:A 1463 34 0.0324 0.0232 1.0000 1.77e-10 7of6:A
88 7of2:A 1410 450 0.4175 0.3106 0.9733 0.0
89 7of2:A 1410 243 0.2259 0.1681 0.9753 5.50e-115
90 7of2:A 1410 237 0.2116 0.1574 0.9367 7.32e-94
91 7of2:A 1410 123 0.1068 0.0794 0.9106 2.85e-38
92 7of2:A 1410 34 0.0324 0.0241 1.0000 1.77e-10
93 6zs9:XA 1501 453 0.4194 0.2931 0.9713 0.0
94 6zs9:XA 1501 252 0.2259 0.1579 0.9405 3.36e-102
95 6zs9:XA 1501 249 0.2173 0.1519 0.9157 7.37e-89
96 6zs9:XA 1501 123 0.1058 0.0740 0.9024 1.32e-36
97 6zs9:XA 1501 34 0.0324 0.0227 1.0000 1.77e-10
98 7of5:A 1389 447 0.4147 0.3132 0.9732 0.0
99 7of5:A 1389 243 0.2259 0.1706 0.9753 5.50e-115
100 7of5:A 1389 234 0.2107 0.1591 0.9444 4.37e-96
101 7of5:A 1389 125 0.1068 0.0806 0.8960 1.71e-35
102 7of5:A 1389 34 0.0324 0.0245 1.0000 1.77e-10
103 6i9r:A 1501 454 0.4194 0.2931 0.9692 0.0
104 6i9r:A 1501 252 0.2259 0.1579 0.9405 3.36e-102
105 6i9r:A 1501 248 0.2164 0.1512 0.9153 2.65e-88
106 6i9r:A 1501 123 0.1058 0.0740 0.9024 1.32e-36
107 6i9r:A 1501 34 0.0324 0.0227 1.0000 1.77e-10
108 7qh6:A 1133 533 0.4719 0.4369 0.9287 0.0
109 7qh6:A 1133 232 0.2135 0.1977 0.9655 5.58e-105
110 7qh6:A 1133 151 0.1439 0.1333 1.0000 1.62e-75
111 7qh6:A 1133 121 0.1087 0.1006 0.9421 1.69e-45
112 7of7:A 1376 447 0.4128 0.3147 0.9687 0.0
113 7of7:A 1376 243 0.2231 0.1701 0.9630 7.17e-109
114 7of7:A 1376 234 0.2031 0.1548 0.9103 1.61e-80
115 7of7:A 1376 125 0.1068 0.0814 0.8960 1.71e-35
116 7of7:A 1376 34 0.0324 0.0247 1.0000 1.77e-10
117 8qsj:A 1418 455 0.4175 0.3089 0.9626 0.0
118 8qsj:A 1418 245 0.2259 0.1671 0.9673 3.31e-112
119 8qsj:A 1418 245 0.2173 0.1608 0.9306 2.04e-94
120 8qsj:A 1418 123 0.1020 0.0755 0.8699 8.03e-29
121 8qsj:A 1418 34 0.0324 0.0240 1.0000 1.77e-10
122 8k2a:L1 1500 458 0.4194 0.2933 0.9607 0.0 8k2b:L1, 8xt0:L1, 8xt1:L1, 8xt2:L1, 8xt3:L1
123 8k2a:L1 1500 247 0.2259 0.1580 0.9595 1.99e-109 8k2b:L1, 8xt0:L1, 8xt1:L1, 8xt2:L1, 8xt3:L1
124 8k2a:L1 1500 246 0.2173 0.1520 0.9268 2.63e-93 8k2b:L1, 8xt0:L1, 8xt1:L1, 8xt2:L1, 8xt3:L1
125 8k2a:L1 1500 124 0.1068 0.0747 0.9032 3.68e-37 8k2b:L1, 8xt0:L1, 8xt1:L1, 8xt2:L1, 8xt3:L1
126 8k2a:L1 1500 34 0.0324 0.0227 1.0000 1.77e-10 8k2b:L1, 8xt0:L1, 8xt1:L1, 8xt2:L1, 8xt3:L1
127 7a5i:A3 1485 458 0.4194 0.2963 0.9607 0.0
128 7a5i:A3 1485 247 0.2259 0.1596 0.9595 1.99e-109
129 7a5i:A3 1485 239 0.2173 0.1535 0.9540 9.34e-103
130 7a5i:A3 1485 118 0.1068 0.0754 0.9492 1.69e-45
131 7a5i:A3 1485 34 0.0324 0.0229 1.0000 1.77e-10
132 7o9k:A 1436 452 0.4147 0.3029 0.9624 0.0
133 7o9k:A 1436 243 0.2259 0.1650 0.9753 5.50e-115
134 7o9k:A 1436 237 0.2164 0.1581 0.9578 7.22e-104
135 7o9k:A 1436 129 0.1068 0.0780 0.8682 6.20e-30
136 7o9k:A 1436 34 0.0324 0.0237 1.0000 1.77e-10
137 7o9m:A 1454 462 0.4194 0.3026 0.9524 0.0
138 7o9m:A 1454 244 0.2259 0.1630 0.9713 2.56e-113
139 7o9m:A 1454 242 0.2164 0.1561 0.9380 1.22e-96
140 7o9m:A 1454 129 0.1068 0.0770 0.8682 6.20e-30
141 7o9m:A 1454 34 0.0324 0.0234 1.0000 1.77e-10
142 7odt:A 1453 461 0.4185 0.3021 0.9523 0.0
143 7odt:A 1453 248 0.2259 0.1631 0.9556 9.27e-108
144 7odt:A 1453 249 0.2173 0.1569 0.9157 7.37e-89
145 7odt:A 1453 125 0.1068 0.0771 0.8960 1.71e-35
146 7odt:A 1453 34 0.0324 0.0234 1.0000 1.77e-10
147 7ods:A 1445 461 0.4185 0.3038 0.9523 0.0
148 7ods:A 1445 248 0.2259 0.1640 0.9556 9.27e-108
149 7ods:A 1445 249 0.2173 0.1578 0.9157 7.37e-89
150 7ods:A 1445 125 0.1068 0.0775 0.8960 1.71e-35
151 7ods:A 1445 34 0.0324 0.0235 1.0000 1.77e-10
152 7odr:A 1448 461 0.4185 0.3032 0.9523 0.0
153 7odr:A 1448 248 0.2259 0.1637 0.9556 9.27e-108
154 7odr:A 1448 249 0.2173 0.1575 0.9157 7.37e-89
155 7odr:A 1448 126 0.1068 0.0773 0.8889 2.22e-34
156 7odr:A 1448 34 0.0324 0.0235 1.0000 1.77e-10
157 8pk0:A 1423 458 0.4137 0.3050 0.9476 0.0
158 8pk0:A 1423 245 0.2259 0.1665 0.9673 3.31e-112
159 8pk0:A 1423 249 0.2173 0.1602 0.9157 7.37e-89
160 8pk0:A 1423 125 0.1068 0.0787 0.8960 1.71e-35
161 8pk0:A 1423 34 0.0324 0.0239 1.0000 1.77e-10
162 8any:A 1558 467 0.4194 0.2824 0.9422 0.0 8oir:B8, 8oit:B8, 7qi4:A, 7qi5:A, 7qi6:A
163 8any:A 1558 249 0.2173 0.1463 0.9157 7.37e-89 8oir:B8, 8oit:B8, 7qi4:A, 7qi5:A, 7qi6:A
164 8any:A 1558 143 0.1296 0.0873 0.9510 3.58e-57 8oir:B8, 8oit:B8, 7qi4:A, 7qi5:A, 7qi6:A
165 8any:A 1558 108 0.0972 0.0655 0.9444 6.12e-40 8oir:B8, 8oit:B8, 7qi4:A, 7qi5:A, 7qi6:A
166 8any:A 1558 129 0.1068 0.0719 0.8682 6.20e-30 8oir:B8, 8oit:B8, 7qi4:A, 7qi5:A, 7qi6:A
167 8any:A 1558 34 0.0324 0.0218 1.0000 1.77e-10 8oir:B8, 8oit:B8, 7qi4:A, 7qi5:A, 7qi6:A
168 6zm6:A 1531 467 0.4185 0.2867 0.9400 0.0
169 6zm6:A 1531 258 0.2259 0.1548 0.9186 7.32e-94
170 6zm6:A 1531 249 0.2173 0.1489 0.9157 7.37e-89
171 6zm6:A 1531 129 0.1068 0.0732 0.8682 6.20e-30
172 6zm6:A 1531 34 0.0324 0.0222 1.0000 1.77e-10
173 6zm5:A 1534 470 0.4194 0.2868 0.9362 0.0
174 6zm5:A 1534 258 0.2259 0.1545 0.9186 7.32e-94
175 6zm5:A 1534 249 0.2173 0.1486 0.9157 7.37e-89
176 6zm5:A 1534 129 0.1068 0.0730 0.8682 6.20e-30
177 6zm5:A 1534 34 0.0324 0.0222 1.0000 1.77e-10
178 7l08:A 1527 470 0.4194 0.2881 0.9362 0.0 7l20:A, 6vlz:A, 6vmi:A
179 7l08:A 1527 253 0.2259 0.1552 0.9368 4.34e-101 7l20:A, 6vlz:A, 6vmi:A
180 7l08:A 1527 249 0.2173 0.1493 0.9157 7.37e-89 7l20:A, 6vlz:A, 6vmi:A
181 7l08:A 1527 129 0.1068 0.0733 0.8682 6.20e-30 7l20:A, 6vlz:A, 6vmi:A
182 7l08:A 1527 34 0.0324 0.0223 1.0000 1.77e-10 7l20:A, 6vlz:A, 6vmi:A
183 7qh7:A 1256 230 0.2107 0.1760 0.9609 1.21e-101
184 7qh7:A 1256 238 0.2097 0.1752 0.9244 7.37e-89
185 7qh7:A 1256 234 0.2031 0.1696 0.9103 4.47e-81
186 7qh7:A 1256 150 0.1430 0.1194 1.0000 5.82e-75
187 7qh7:A 1256 116 0.1068 0.0892 0.9655 2.81e-48
188 7qh7:A 1256 34 0.0324 0.0271 1.0000 1.77e-10

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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