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BioLiP
>rna
gcggguguuuaccaggucagguccgaaaggaagcagccaaggcacuu

The query sequence (length=47) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2pxl:B 47 47 1.0000 1.0000 1.0000 3.00e-19
2 2pxf:B 49 45 0.9574 0.9184 1.0000 3.87e-18
3 2pxv:B 49 43 0.9149 0.8776 1.0000 5.01e-17
4 2pxk:B 49 41 0.8723 0.8367 1.0000 6.48e-16
5 2xkv:B 96 39 0.8298 0.4062 1.0000 8.39e-15
6 2pxu:B 49 39 0.8298 0.7959 1.0000 8.39e-15
7 2pxt:B 49 39 0.8298 0.7959 1.0000 8.39e-15
8 2pxq:B 49 39 0.8298 0.7959 1.0000 8.39e-15
9 2pxp:B 49 43 0.8936 0.8571 0.9767 8.39e-15
10 2pxe:B 49 39 0.8298 0.7959 1.0000 8.39e-15
11 2pxd:B 49 43 0.8936 0.8571 0.9767 8.39e-15
12 2pxb:B 49 39 0.8298 0.7959 1.0000 8.39e-15
13 2j28:8 74 39 0.8298 0.5270 1.0000 8.39e-15
14 1dul:B 49 39 0.8298 0.7959 1.0000 8.39e-15 1hq1:B, 3lqx:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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