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BioLiP
>rna
gcggauuuagcucaguugggagagcgccggucuccaaaaccggagguccuguguucgauccacagaauucgcacca

The query sequence (length=76) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4cxg:Y 76 76 1.0000 1.0000 1.0000 4.45e-35 4cxh:Y
2 4v4i:0 76 76 0.9211 0.9211 0.9211 4.51e-25 4v4j:2
3 1ob2:B 76 76 0.9079 0.9079 0.9079 2.10e-23
4 8ccs:Bb 76 76 0.9079 0.9079 0.9079 2.10e-23 8cdl:Bb, 8cdr:Bb, 8ceh:Bb, 8cf5:Bb, 8cg8:Bb, 8civ:Bb, 8cku:Bb, 3deg:A, 6gq1:AX, 6gqb:AX, 6gqv:AY, 3izy:N, 5m1j:A3, 1mj1:D, 1ml5:B, 1sz1:E, 1sz1:F, 1ttt:D, 1ttt:E, 1ttt:F, 4v49:AV, 4v4p:BB, 4v4p:BC, 4v4r:AV, 4v4r:AW, 4v4s:AV, 4v4s:AW, 4v4t:AV, 4v4t:AW, 4v4v:AU, 4v4v:AV, 4v4v:AW, 4v4w:AW, 4v65:AE, 4v66:AE, 4v69:AY, 4v7h:A7, 6xiq:AX, 6xz7:g, 6xzb:g2
5 4v65:AA 75 75 0.8947 0.9067 0.9067 7.55e-23 4v65:AP, 4v66:AP
6 1ob5:B 76 74 0.8816 0.8816 0.9054 2.71e-22 1ob5:D, 1ob5:F
7 8cth:C 74 74 0.8816 0.9054 0.9054 2.71e-22
8 6xir:AZ 73 73 0.8684 0.9041 0.9041 9.76e-22
9 6ah3:T 80 73 0.8684 0.8250 0.9041 9.76e-22
10 6lvr:D 72 72 0.8553 0.9028 0.9028 3.51e-21 6lvr:B
11 3wc2:P 74 74 0.8684 0.8919 0.8919 1.26e-20
12 3wc2:Q 73 73 0.8553 0.8904 0.8904 4.54e-20
13 4v68:AY 72 76 0.8553 0.9028 0.8553 1.27e-15
14 8bsj:x 74 78 0.8684 0.8919 0.8462 1.65e-14
15 3icq:D 62 36 0.4737 0.5806 1.0000 7.66e-13
16 3icq:E 62 34 0.4474 0.5484 1.0000 9.90e-12

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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