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BioLiP
>rna
gccuggcggccguagcgcgguggucccaccugaccccaugccgaacucagaagugaaacgccguagcgccgaugguagug
uggggucuccccaugcgagaguagggaacugccaggca

The query sequence (length=118) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8akn:b 119 118 1.0000 0.9916 1.0000 3.47e-58 8am9:b, 8ana:b, 8ap4:b, 9ax7:b, 8aye:b, 8b0x:b, 7bl2:B, 7bl3:B, 7bl4:B, 7bl5:B, 7bl6:B, 8c8x:B, 8c8y:B, 8c8z:B, 8c90:B, 8c94:B, 8c95:B, 8ceu:b, 8cgd:b, 9cg5:b, 9cg6:b, 9cg7:b, 8eiu:b, 8emm:b, 9fbv:b, 8fto:b, 8g6w:b, 8g6x:b, 8g6y:b, 6gbz:B, 6gc0:B, 6gc4:B, 6gc8:B, 8hsp:b, 8htz:b, 8hu1:b, 6i7v:DB, 8ifb:b, 8ifc:b, 8j1z:b, 3jcn:B, 7k00:b, 7oiz:b, 7oj0:b, 8p16:3, 8p17:3, 8p18:3, 7p3k:b, 8phj:b, 8pva:b, 8q4f:b, 8qk7:3, 8qoa:b, 8r6c:b, 8r8m:b, 4u1u:BB, 4u1v:BB, 4u20:BB, 4u24:BB, 4u25:BB, 4u26:BB, 4u27:BB, 5u9f:02, 5u9g:02, 4v6t:BB, 4v7c:BB, 4v7d:AB, 4v9c:DB, 4v9d:CB, 4wf1:BB, 4woi:BB, 7y7c:b, 7y7d:b, 7y7e:b, 7y7f:b, 7y7g:b, 7y7h:b
2 5afi:B 120 118 1.0000 0.9833 1.0000 3.47e-58 6bu8:02, 7cpj:B, 6dnc:C, 6enf:B, 6enj:B, 6enu:B, 6gwt:B, 6gxm:B, 6gxn:B, 6gxo:B, 6gxp:B, 6h4n:B, 6h58:B, 6h58:BB, 3j9y:B, 7jss:2, 7jsw:2, 7jsz:2, 7jt1:2, 7jt2:2, 7jt3:2, 7k50:2, 7k51:2, 7k52:2, 7k53:2, 7k54:2, 7k55:2, 5kps:29, 5kpv:28, 5kpw:28, 5kpx:28, 5l3p:B, 7lv0:2, 5mgp:B, 5np6:Z, 5o2r:B, 6ofx:2, 6og7:2, 6ogf:2, 6ogg:2, 6ogi:2, 8pkl:8, 8rpy:B, 8rpz:B, 8rq0:B, 8rq2:B, 7ss9:2, 7ssd:2, 7ssl:2, 7ssn:2, 7sso:2, 7ssw:2, 7st2:2, 7st6:2, 7st7:2, 7tos:5S, 5uyk:02, 5uyl:02, 5uym:02, 5uyn:02, 5uyp:02, 5uyq:02, 8vs9:5S, 8vsa:5S, 6vwl:3, 6vwm:3, 6vwn:3, 5wdt:B, 6wd0:2, 6wd1:2, 6wd2:2, 6wd3:2, 6wd4:2, 6wd5:2, 6wd6:2, 6wd7:2, 6wd8:2, 6wd9:2, 6wda:2, 6wdb:2, 6wdc:2, 6wdd:2, 6wde:2, 6wdf:2, 6wdg:2, 6wdh:2, 6wdi:2, 6wdj:2, 6wdk:2, 6wdl:2, 6wdm:2, 5we4:B, 5we6:B, 5wf0:B, 5wfk:B, 5wfs:B, 6y69:B
3 7abz:3 118 118 1.0000 1.0000 1.0000 3.47e-58 9ax8:X, 8b7y:J, 6by1:CB, 6by1:DB, 7d6z:B, 7d80:a, 6i0y:B, 6i7v:CB, 5iqr:3, 5it8:CB, 5j5b:CB, 3j7z:B, 5j7l:CB, 5j88:CB, 5j8a:CB, 5j91:CB, 3jbu:a, 3jcd:B, 3jce:B, 3jcj:0, 5jc9:CB, 5jte:BB, 5ju8:BB, 6lkq:u, 7lvk:J, 5nwy:O, 6o9k:X, 6pj6:J, 8qbt:B, 6qdw:a, 7qg8:O, 7qgh:O, 7qgn:O, 7qgr:O, 7s1g:J, 7s1h:J, 7s1i:J, 7s1j:J, 7s1k:J, 4u1u:DB, 4u1v:DB, 4u20:DB, 4u24:DB, 4u25:DB, 4u26:DB, 4u27:DB, 5u4i:B, 6u48:CB, 7uph:J, 4uy8:B, 4v6c:BB, 4v6d:BB, 4v6e:BB, 4v7b:BB, 4v7s:BB, 4v7t:BB, 4v7u:BB, 4v7v:BB, 4v85:BB, 4v89:BB, 4v9c:BB, 4v9d:DB, 4v9o:AB, 4v9o:CB, 4v9o:EB, 4v9o:GB, 4v9p:AB, 4v9p:CB, 4v9p:EB, 4v9p:GB, 8w51:B, 4wf1:DB, 4woi:CB, 4www:RB, 4ybb:CB, 7yla:J, 6ys3:a, 7z20:a, 7zod:a, 7zp8:a, 7zq5:a, 7zq6:a
4 8a3l:b 120 118 1.0000 0.9833 1.0000 3.47e-58 7ac7:3, 7acj:3, 7acr:3, 7b5k:B, 8bf7:1, 8bge:1, 8bgh:1, 8bh4:1, 8bhj:1, 8bhl:1, 8bhn:1, 8bhp:1, 8bil:1, 8bim:1, 7bv8:B, 6c4i:B, 8fiz:BC, 5gad:B, 5gae:B, 5gaf:B, 5gag:B, 5gah:B, 5h5u:B, 6hrm:3, 5it8:DB, 5j5b:DB, 5j7l:DB, 5j88:DB, 5j8a:DB, 3j9z:LB, 5j91:DB, 3ja1:LB, 5jc9:DB, 5kcr:1B, 5kcs:1B, 5lza:B, 5lzb:B, 5lzc:B, 5lzd:B, 5lze:B, 5lzf:B, 7m5d:3, 5mdv:3, 5mdw:3, 5mdy:3, 5mdz:3, 7n1p:5, 7n2c:5, 7n2u:5, 7n2v:5, 7n30:5, 7n31:5, 7nbu:b, 5nco:B, 7nso:B, 7nsp:B, 7nsq:B, 7nwt:3, 7nww:3, 7o19:BB, 7o1a:BB, 7o1c:BB, 7oif:3, 7oig:3, 7oii:3, 6om6:3, 6ore:3, 6orl:3, 6osk:3, 6osq:3, 6ost:3, 6ot3:3, 7ot5:3, 7otc:B, 6ouo:3, 8peg:8, 7pjs:B, 7pjt:B, 7pju:B, 7pjv:B, 7pjw:B, 7pjx:B, 7pjy:B, 7pjz:B, 7q4k:BB, 6q97:3, 6q98:3, 6q9a:3, 6qul:B, 8r3v:82, 8rcl:82, 8rcm:82, 8rcs:82, 8rct:82, 6s0k:B, 7sa4:4, 6szs:B, 6tbv:05S1, 6tc3:05S1, 7ug7:5, 8upo:d, 8upr:d, 8uql:d, 8uqm:d, 8uqp:d, 8ur0:d, 8urh:d, 8uri:d, 8urx:d, 8ury:d, 4v6k:AA, 4v6l:BA, 4v6m:B7, 4v6n:AA, 4v6o:BA, 4v6p:BA, 4v6q:BA, 4v6r:BA, 4v6s:AA, 4v6v:Ba, 6vu3:d, 6vyq:d, 6vyr:d, 6vys:d, 6vyt:d, 6vyu:d, 6vyw:d, 6vyx:d, 6vyy:d, 6vyz:d, 6vz2:d, 6vz3:d, 6vz5:d, 6vz7:d, 6vzj:d, 6x6t:d, 6x7f:d, 6x7k:d, 6x9q:d, 6xdq:d, 6xdr:d, 6xgf:d, 6xii:d, 6xij:d, 6xz7:B, 6xza:B2, 6xzb:B2, 4ybb:DB, 6ysr:B, 6yss:B, 6yst:B, 6ysu:B, 6ztj:BB, 6ztl:BB, 6ztm:BB, 6ztn:BB, 6zto:BB, 6ztp:BB, 7zta:05S1, 6zu1:BB
5 3jbv:a 117 117 0.9915 1.0000 1.0000 1.25e-57
6 5ady:A 117 117 0.9915 1.0000 1.0000 1.25e-57 5aka:A, 3bbx:A, 8g2u:A, 8g31:A, 8g34:A, 8g38:A, 2j28:A, 6o9j:A, 8t5d:A, 8t5h:A, 4v4h:BA, 4v4h:DA, 4v4q:BA, 4v4q:DA, 4v50:BA, 4v50:DA, 4v52:BA, 4v52:DA, 4v53:BA, 4v53:DA, 4v54:BA, 4v54:DA, 4v55:BA, 4v55:DA, 4v56:BA, 4v56:DA, 4v57:BA, 4v57:DA, 4v5b:AA, 4v5b:CA, 4v5y:BA, 4v5y:DA, 4v64:BA, 4v64:DA, 4v65:BA, 4v66:BA, 4v69:BA, 4v6c:DB, 4v6d:DB, 4v6e:DB, 4v6y:BB, 4v6z:BB, 4v70:BB, 4v71:BB, 4v72:BB, 4v73:BB, 4v74:BB, 4v75:BB, 4v76:BB, 4v77:BB, 4v78:BB, 4v79:BB, 4v7a:BB, 4v7i:A7, 4v7s:DB, 4v7t:DB, 4v7u:DB, 4v7v:DB, 4www:YB
7 8ekc:B 120 118 0.9915 0.9750 0.9915 1.61e-56 8fzd:B, 8fze:B, 8fzf:B, 8fzg:B, 8fzh:B, 8fzi:B, 8fzj:B, 8g7p:B, 8g7q:B, 8g7r:B, 8g7s:B, 8syl:B
8 3j5l:B 117 118 0.9915 1.0000 0.9915 5.80e-56
9 7qq3:J 118 118 0.9831 0.9831 0.9831 7.51e-55
10 4csu:A 115 112 0.9492 0.9739 1.0000 7.51e-55 3j8g:A, 4v5h:BA
11 4v4v:B9 108 109 0.9153 1.0000 0.9908 5.85e-51 4v4w:B9
12 6wnw:4 3031 86 0.7288 0.0284 1.0000 2.13e-40
13 6wnw:4 3031 40 0.3220 0.0125 0.9500 6.19e-11
14 6wnt:4 3025 86 0.7288 0.0284 1.0000 2.13e-40 6wnv:4
15 6wnt:4 3025 40 0.3220 0.0126 0.9500 6.19e-11 6wnv:4
16 6spd:B 116 93 0.6949 0.7069 0.8817 6.06e-26
17 6spb:B 117 93 0.6949 0.7009 0.8817 6.06e-26 6spf:B, 6spg:B, 7unr:B, 7unu:B, 7unv:B, 7unw:B
18 8cd1:B 120 93 0.6949 0.6833 0.8817 6.06e-26
19 8cgv:b 56 47 0.3898 0.8214 0.9787 4.75e-17
20 8cgk:b 39 36 0.3051 0.9231 1.0000 1.33e-12
21 8cam:b 34 34 0.2881 1.0000 1.0000 1.72e-11
22 5ns3:C 34 32 0.2627 0.9118 0.9688 1.04e-08
23 1mji:C 34 29 0.2458 0.8529 1.0000 1.04e-08 1mji:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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