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BioLiP
>rna
gccgagguagcucaguugguagagcaugcgacugaaaaucgcagugucggcgguucgauucugcuccucggcac

The query sequence (length=74) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3tup:T 74 74 1.0000 1.0000 1.0000 5.55e-34
2 4v4x:AD 76 74 0.9865 0.9605 0.9865 2.58e-32 4v4z:AD
3 3b0v:A 73 73 0.9595 0.9726 0.9726 4.32e-30 3b0v:B
4 1eiy:C 76 74 0.9595 0.9342 0.9595 5.59e-29 2iy5:T

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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