Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>rna
gcccggaugguggaaucgguagacacaagggauucccucggcgcgcgcugugcggguucaagucccgcuccggguacca

The query sequence (length=79) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4aq7:B 79 79 1.0000 1.0000 1.0000 1.01e-36 4cqn:E, 5on3:B, 5on3:E
2 3zgz:E 80 79 0.9873 0.9750 0.9873 4.68e-35
3 5on2:E 81 81 1.0000 0.9753 0.9753 6.06e-34
4 4aq7:E 77 79 0.9747 1.0000 0.9747 7.83e-33 5omw:E
5 3zgz:B 82 81 0.9873 0.9512 0.9630 2.82e-32
6 4cqn:B 82 82 1.0000 0.9634 0.9634 2.82e-32 5onh:B
7 4ari:B 80 81 0.9873 0.9750 0.9630 1.01e-31 3zju:B
8 5onh:E 83 83 1.0000 0.9518 0.9518 3.64e-31
9 5omw:B 83 83 1.0000 0.9518 0.9518 3.64e-31
10 3zjt:B 83 82 0.9873 0.9398 0.9512 1.31e-30
11 4as1:B 83 83 0.9873 0.9398 0.9398 1.70e-29
12 3zjv:B 85 85 1.0000 0.9294 0.9294 2.19e-28
13 5on2:B 85 85 1.0000 0.9294 0.9294 2.19e-28
14 8pot:B 84 84 0.9873 0.9286 0.9286 7.89e-28
15 4arc:B 71 69 0.8354 0.9296 0.9565 4.75e-25
16 2nqp:F 71 73 0.8608 0.9577 0.9315 6.14e-24

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218