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BioLiP
>rna
gcccggaugguggaaucgguagacacaagggauuaaucccucggcgcgcgcugugcggguucaagucccgcuccggguac
ca

The query sequence (length=82) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4cqn:B 82 82 1.0000 1.0000 1.0000 2.27e-38 5onh:B
2 5omw:B 83 83 1.0000 0.9880 0.9880 1.06e-36
3 5on2:E 81 82 0.9878 1.0000 0.9878 3.80e-36
4 3zjv:B 85 85 1.0000 0.9647 0.9647 6.36e-34
5 5on2:B 85 85 1.0000 0.9647 0.9647 6.36e-34
6 8pot:B 84 84 0.9878 0.9643 0.9643 2.29e-33
7 5onh:E 83 84 0.9878 0.9759 0.9643 2.29e-33
8 4aq7:B 79 82 0.9634 1.0000 0.9634 2.96e-32 4cqn:E, 5on3:B, 5on3:E
9 4as1:B 83 84 0.9756 0.9639 0.9524 1.06e-31
10 3zgz:E 80 82 0.9512 0.9750 0.9512 1.38e-30
11 3zjt:B 83 84 0.9634 0.9518 0.9405 4.95e-30
12 4aq7:E 77 82 0.9390 1.0000 0.9390 2.30e-28 5omw:E
13 3zgz:B 82 84 0.9512 0.9512 0.9286 8.28e-28
14 4ari:B 80 84 0.9512 0.9750 0.9286 8.28e-28 3zju:B
15 2nqp:F 71 74 0.8537 0.9859 0.9459 3.85e-26
16 4arc:B 71 72 0.8049 0.9296 0.9167 3.88e-21

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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