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BioLiP
>rna
gcccggaugguggaaucgguagacacaagggauuaaaucccucggcguucgcgcugugcggguucaagucccgcuccggg
uacca

The query sequence (length=85) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3zjv:B 85 85 1.0000 1.0000 1.0000 5.11e-40
2 8pot:B 84 84 0.9882 1.0000 1.0000 1.84e-39
3 5onh:E 83 85 0.9765 1.0000 0.9765 3.98e-36
4 5omw:B 83 85 0.9765 1.0000 0.9765 3.98e-36
5 4as1:B 83 85 0.9765 1.0000 0.9765 3.98e-36
6 4cqn:B 82 85 0.9647 1.0000 0.9647 6.66e-34 5onh:B
7 5on2:B 85 87 0.9765 0.9765 0.9540 2.40e-33
8 3zjt:B 83 85 0.9529 0.9759 0.9529 3.10e-32
9 5on2:E 81 85 0.9529 1.0000 0.9529 3.10e-32
10 3zgz:B 82 85 0.9412 0.9756 0.9412 1.44e-30
11 4ari:B 80 85 0.9412 1.0000 0.9412 5.19e-30 3zju:B
12 4aq7:B 79 85 0.9294 1.0000 0.9294 2.41e-28 4cqn:E, 5on3:B, 5on3:E
13 3zgz:E 80 85 0.9176 0.9750 0.9176 1.12e-26
14 4aq7:E 77 85 0.9059 1.0000 0.9059 1.88e-24 5omw:E
15 2nqp:F 71 77 0.8353 1.0000 0.9221 6.76e-24
16 4arc:B 71 73 0.8000 0.9577 0.9315 2.43e-23

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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