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BioLiP
>rna
gcccggaugguggaaucgguagacacaagggauaaucccucggcguucgcgcugugcggguucaagucccgcuccgggua
cca

The query sequence (length=83) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5onh:E 83 83 1.0000 1.0000 1.0000 6.41e-39
2 4as1:B 83 83 0.9880 0.9880 0.9880 2.98e-37
3 3zjv:B 85 85 1.0000 0.9765 0.9765 3.86e-36
4 8pot:B 84 84 0.9880 0.9762 0.9762 1.39e-35
5 3zjt:B 83 83 0.9759 0.9759 0.9759 4.99e-35
6 5on2:E 81 83 0.9759 1.0000 0.9759 4.99e-35
7 3zgz:B 82 83 0.9639 0.9756 0.9639 2.32e-33
8 4cqn:B 82 84 0.9759 0.9878 0.9643 2.32e-33 5onh:B
9 4ari:B 80 83 0.9639 1.0000 0.9639 8.36e-33 3zju:B
10 5omw:B 83 85 0.9759 0.9759 0.9529 3.01e-32
11 4aq7:B 79 83 0.9518 1.0000 0.9518 3.89e-31 4cqn:E, 5on3:B, 5on3:E
12 3zgz:E 80 83 0.9398 0.9750 0.9398 1.81e-29
13 5on2:B 85 87 0.9759 0.9529 0.9310 1.81e-29
14 4aq7:E 77 83 0.9277 1.0000 0.9277 3.03e-27 5omw:E
15 2nqp:F 71 75 0.8554 1.0000 0.9467 1.09e-26
16 4arc:B 71 71 0.8193 0.9577 0.9577 3.92e-26

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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