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BioLiP
>rna
gcccggaugguggaaucgguagacacaagggauaaucccucggcgcgcgcugugcggguucaagucccgcuccggguacc
a

The query sequence (length=81) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5on2:E 81 81 1.0000 1.0000 1.0000 8.04e-38
2 4cqn:B 82 82 1.0000 0.9878 0.9878 3.74e-36 5onh:B
3 5onh:E 83 83 1.0000 0.9759 0.9759 4.84e-35
4 5omw:B 83 83 1.0000 0.9759 0.9759 4.84e-35
5 4aq7:B 79 81 0.9753 1.0000 0.9753 6.26e-34 4cqn:E, 5on3:B, 5on3:E
6 4as1:B 83 83 0.9877 0.9639 0.9639 2.25e-33
7 3zjv:B 85 85 1.0000 0.9529 0.9529 2.91e-32
8 3zgz:E 80 81 0.9630 0.9750 0.9630 2.91e-32
9 5on2:B 85 85 1.0000 0.9529 0.9529 2.91e-32
10 8pot:B 84 84 0.9877 0.9524 0.9524 1.05e-31
11 3zjt:B 83 83 0.9753 0.9518 0.9518 3.77e-31
12 4aq7:E 77 81 0.9506 1.0000 0.9506 4.87e-30 5omw:E
13 3zgz:B 82 83 0.9630 0.9512 0.9398 1.75e-29
14 4ari:B 80 83 0.9630 0.9750 0.9398 6.30e-29 3zju:B
15 2nqp:F 71 73 0.8642 0.9859 0.9589 8.15e-28
16 4arc:B 71 71 0.8148 0.9296 0.9296 2.95e-22

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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