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BioLiP
>rna
gaugagacgcguuuuagagcuagaaauagcaaguuaaaauaaggcuaguccguuaucaacuugaaaaagugu

The query sequence (length=72) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4zt0:B 72 72 1.0000 1.0000 1.0000 6.92e-33 4zt0:D, 4zt9:B, 4zt9:D
2 7z4g:A 91 71 0.9861 0.7802 1.0000 2.49e-32
3 7z4d:F 77 71 0.9861 0.9221 1.0000 2.49e-32
4 7z4d:A 75 71 0.9861 0.9467 1.0000 2.49e-32
5 8ye6:C 92 71 0.9861 0.7717 1.0000 2.49e-32 7z4h:A
6 8t6t:B 95 71 0.9861 0.7474 1.0000 2.49e-32
7 8t6s:B 90 71 0.9861 0.7889 1.0000 2.49e-32 7z4c:A
8 8t6p:B 88 71 0.9861 0.8068 1.0000 2.49e-32 8t76:B, 8t7s:H, 7z4e:A, 7z4k:A
9 7s4v:B 98 71 0.9861 0.7245 1.0000 2.49e-32 7s4x:B, 8spq:B, 8sqh:B, 8srs:B, 8t7s:B, 8tzz:B, 8u3y:B, 7z4j:A
10 7s4u:B 97 71 0.9861 0.7320 1.0000 2.49e-32
11 6o0z:B 96 71 0.9861 0.7396 1.0000 2.49e-32 8t6x:B, 7z4i:A, 7z4l:A
12 6o0x:B 98 71 0.9861 0.7245 1.0000 2.49e-32 6o0y:B
13 8t78:B 89 67 0.9306 0.7528 1.0000 4.16e-30
14 8t77:B 89 65 0.9028 0.7303 1.0000 5.39e-29 8t79:B
15 8t6y:B 88 65 0.9028 0.7386 1.0000 5.39e-29
16 8ye9:C 90 71 0.9583 0.7667 0.9718 1.94e-28
17 4oo8:B 97 63 0.8750 0.6495 1.0000 6.97e-28 4oo8:E
18 6ifo:D 90 63 0.8750 0.7000 1.0000 6.97e-28
19 6ifo:C 88 63 0.8750 0.7159 1.0000 6.97e-28 5xbl:B
20 6ai6:B 81 63 0.8750 0.7778 1.0000 6.97e-28 5b2r:A, 5b2s:A, 5b2t:A
21 5vw1:C 73 62 0.8611 0.8493 1.0000 2.51e-27
22 7qr8:A 85 62 0.8611 0.7294 1.0000 2.51e-27
23 7qqw:A 81 62 0.8611 0.7654 1.0000 2.51e-27
24 7qqv:A 85 62 0.8611 0.7294 1.0000 2.51e-27
25 7qqs:A 84 62 0.8611 0.7381 1.0000 2.51e-27 7qqt:A, 7qqu:A, 7qqx:A, 7qqz:A, 7qr5:A
26 7zo1:A 85 61 0.8472 0.7176 1.0000 9.01e-27
27 8ygj:B 136 61 0.8472 0.4485 1.0000 9.01e-27
28 5y36:B 99 61 0.8472 0.6162 1.0000 9.01e-27
29 8wuv:B 126 61 0.8472 0.4841 1.0000 9.01e-27
30 8wuu:B 111 61 0.8472 0.5495 1.0000 9.01e-27
31 8wut:B 112 61 0.8472 0.5446 1.0000 9.01e-27
32 8wus:B 115 61 0.8472 0.5304 1.0000 9.01e-27
33 6vpc:A 81 68 0.9167 0.8148 0.9706 9.01e-27
34 4un4:A 82 61 0.8472 0.7439 1.0000 9.01e-27 4un5:A
35 7s38:R 87 61 0.8472 0.7011 1.0000 9.01e-27
36 7s36:R 87 61 0.8472 0.7011 1.0000 9.01e-27 8t6o:B
37 7qr1:A 83 61 0.8472 0.7349 1.0000 9.01e-27
38 7qr0:A 82 61 0.8472 0.7439 1.0000 9.01e-27
39 7qqq:A 83 61 0.8472 0.7349 1.0000 9.01e-27
40 7qqp:A 84 61 0.8472 0.7262 1.0000 9.01e-27 7qqr:A
41 7oxa:A 81 61 0.8472 0.7531 1.0000 9.01e-27
42 7ox9:A 84 61 0.8472 0.7262 1.0000 9.01e-27 7qqo:A, 7qr7:A
43 7ox8:A 84 61 0.8472 0.7262 1.0000 9.01e-27
44 7ox7:A 81 61 0.8472 0.7531 1.0000 9.01e-27
45 8kal:E 95 61 0.8472 0.6421 1.0000 9.01e-27
46 8kak:A 94 61 0.8472 0.6489 1.0000 9.01e-27 8kak:E, 8kal:A, 8kam:A
47 8kag:A 98 61 0.8472 0.6224 1.0000 9.01e-27
48 6k4s:A 80 61 0.8472 0.7625 1.0000 9.01e-27 6k4u:A
49 6k4p:A 82 61 0.8472 0.7439 1.0000 9.01e-27
50 8g1i:B 98 61 0.8472 0.6224 1.0000 9.01e-27
51 5fw1:A 81 61 0.8472 0.7531 1.0000 9.01e-27 5fw2:A, 5fw3:A, 6k3z:A, 6k4q:A, 6k57:A, 4un3:A
52 5fq5:A 83 61 0.8472 0.7349 1.0000 9.01e-27
53 6aeb:A 95 61 0.8472 0.6421 1.0000 9.01e-27 6aeb:E, 6aeg:A
54 7v59:C 115 46 0.6389 0.4000 1.0000 1.97e-18 7v59:G
55 8fzt:B 69 46 0.6389 0.6667 1.0000 1.97e-18
56 5f9r:A 116 46 0.6389 0.3966 1.0000 1.97e-18 6mcb:B, 6mcc:B, 5vzl:B
57 8kah:I 63 45 0.6250 0.7143 1.0000 7.07e-18 8kah:J, 8kai:I, 8kai:J, 8kaj:I, 8kaj:J

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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