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BioLiP
>rna
gagacuugggcaaugugacugcugaucagcagucacauugcccaagucucuu

The query sequence (length=52) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7w0e:C 53 52 1.0000 0.9811 1.0000 5.83e-22
2 7w0e:C 53 51 0.9808 0.9623 1.0000 2.10e-21
3 7w0d:D 52 52 1.0000 1.0000 1.0000 5.83e-22 7w0d:C, 7w0e:D
4 7w0d:D 52 50 0.9615 0.9615 1.0000 7.55e-21 7w0d:C, 7w0e:D
5 8hf0:N 50 50 0.9615 1.0000 1.0000 7.55e-21
6 8hf0:N 50 48 0.9231 0.9600 1.0000 9.76e-20
7 8hf0:P 47 47 0.9038 1.0000 1.0000 3.51e-19
8 8hf0:P 47 47 0.9038 1.0000 1.0000 3.51e-19
9 7w0c:D 37 37 0.7115 1.0000 1.0000 1.27e-13
10 7w0c:D 37 35 0.6731 0.9459 1.0000 1.65e-12
11 7w0c:C 35 35 0.6731 1.0000 1.0000 1.65e-12
12 7w0c:C 35 35 0.6731 1.0000 1.0000 1.65e-12
13 7w0a:D 32 32 0.6154 1.0000 1.0000 7.66e-11 7w0a:H
14 7w0a:D 32 30 0.5769 0.9375 1.0000 9.90e-10 7w0a:H
15 7w0a:C 31 31 0.5962 1.0000 1.0000 2.75e-10 7w0a:G
16 7w0a:C 31 30 0.5769 0.9677 1.0000 9.90e-10 7w0a:G

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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