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BioLiP
>rna
gacuugggcaaugugacugcugaucagcagucacauugcccaagucucuu

The query sequence (length=50) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7w0e:C 53 50 1.0000 0.9434 1.0000 7.10e-21
2 7w0e:C 53 49 0.9800 0.9245 1.0000 2.55e-20
3 7w0d:D 52 50 1.0000 0.9615 1.0000 7.10e-21 7w0d:C, 7w0e:D
4 7w0d:D 52 48 0.9600 0.9231 1.0000 9.19e-20 7w0d:C, 7w0e:D
5 8hf0:N 50 50 1.0000 1.0000 1.0000 7.10e-21
6 8hf0:N 50 46 0.9200 0.9200 1.0000 1.19e-18
7 8hf0:P 47 47 0.9400 1.0000 1.0000 3.30e-19
8 8hf0:P 47 45 0.9000 0.9574 1.0000 4.28e-18
9 7w0c:D 37 37 0.7400 1.0000 1.0000 1.20e-13
10 7w0c:D 37 33 0.6600 0.8919 1.0000 2.00e-11
11 7w0c:C 35 35 0.7000 1.0000 1.0000 1.55e-12
12 7w0c:C 35 33 0.6600 0.9429 1.0000 2.00e-11
13 7w0a:D 32 32 0.6400 1.0000 1.0000 7.20e-11 7w0a:H
14 7w0a:D 32 28 0.5600 0.8750 1.0000 1.21e-08 7w0a:H
15 7w0a:C 31 31 0.6200 1.0000 1.0000 2.59e-10 7w0a:G
16 7w0a:C 31 28 0.5600 0.9032 1.0000 1.21e-08 7w0a:G

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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