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BioLiP
>rna
gaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuucaguguaacaacugaaaugaccucaaugaggc
u

The query sequence (length=81) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5lqw:2 81 81 1.0000 1.0000 1.0000 8.04e-38
2 7dco:H 169 71 0.8765 0.4201 1.0000 2.91e-32
3 6j6q:L 210 81 0.9506 0.3667 0.9506 4.87e-30
4 6j6h:L 209 81 0.9506 0.3684 0.9506 4.87e-30
5 5gm6:L 66 64 0.7901 0.9697 1.0000 2.27e-28
6 6j6g:L 208 81 0.9383 0.3654 0.9383 8.15e-28
7 5mq0:2 155 71 0.8148 0.4258 0.9296 2.95e-22
8 5wsg:L 91 50 0.6173 0.5495 1.0000 1.37e-20 5ylz:F
9 5lj3:Z 171 71 0.8025 0.3801 0.9155 1.37e-20 5lj5:Z
10 6j6n:L 205 81 0.8889 0.3512 0.8889 4.94e-20
11 5gmk:L 127 81 0.8889 0.5669 0.8889 4.94e-20
12 5mps:2 49 47 0.5802 0.9592 1.0000 6.39e-19
13 6exn:2 136 47 0.5802 0.3456 1.0000 6.39e-19
14 6bk8:2 135 45 0.5556 0.3333 1.0000 8.27e-18
15 7b9v:2 196 45 0.5556 0.2296 1.0000 8.27e-18
16 5nrl:2 155 44 0.5432 0.2839 1.0000 2.97e-17
17 6g90:2 143 44 0.5432 0.3077 1.0000 2.97e-17
18 5zwo:H 150 43 0.5309 0.2867 1.0000 1.07e-16
19 5zwm:H 206 43 0.5309 0.2087 1.0000 1.07e-16
20 7oqb:2 143 43 0.5309 0.3007 1.0000 1.07e-16 7oqe:2
21 5y88:F 82 41 0.5062 0.5000 1.0000 1.38e-15
22 3jb9:P 111 44 0.5309 0.3874 0.9773 4.98e-15

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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