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BioLiP
>rna
cuuaaagagucaacccuuugcuuaucuucccuauuuaaauguuagcagccgcauaggcu

The query sequence (length=59) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8k28:P 59 59 1.0000 1.0000 1.0000 9.04e-26
2 8k0k:J 60 59 1.0000 0.9833 1.0000 9.04e-26 8k22:P, 8k23:P, 8k23:p, 8k24:p, 8k24:P, 8k27:P, 8k29:P
3 7wwv:M 39 39 0.6610 1.0000 1.0000 1.19e-14
4 7wwu:M 50 53 0.8136 0.9600 0.9057 1.98e-12

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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