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BioLiP
>rna
cuguggaaaugcgaaacacuugccaggugacccauccauccucccacggugagcuuucuuuucaccauaauccacuuggg
ccucucgacuucucgcguuacucggagcgggggcucaagauugaaaaaugcagcucacccuacguacuguugugaguucg
gcgcauuaaagcaaaaaccugggguguu

The query sequence (length=188) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8ova:BE 188 188 1.0000 1.0000 1.0000 7.18e-97
2 8rxh:L3 183 186 0.8777 0.9016 0.8871 4.54e-59 8rxx:L3
3 4v8m:BE 210 210 0.9734 0.8714 0.8714 2.73e-56
4 8ove:BE 166 170 0.8191 0.9277 0.9059 9.83e-56
5 6az3:3 177 186 0.8723 0.9266 0.8817 9.83e-56
6 5t2a:E 169 185 0.8457 0.9408 0.8595 2.14e-47
7 8a98:3 161 165 0.7500 0.8758 0.8545 1.30e-39
8 8ovj:3 156 112 0.5372 0.6474 0.9018 1.01e-35
9 5t5h:E 146 112 0.5266 0.6781 0.8839 1.02e-30
10 8a3w:3 153 112 0.5213 0.6405 0.8750 1.32e-29
11 3jcs:3 184 179 0.7394 0.7554 0.7765 4.81e-19

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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