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BioLiP
>rna
cuacucucaaguuuuagagcuagaaauagcaaguuaaaauaaggcuaguccguuaucaacuugaaaaaguggcaccgagu
cggugcu

The query sequence (length=87) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7s38:R 87 87 1.0000 1.0000 1.0000 4.07e-41
2 6aeb:A 95 79 0.9080 0.8316 1.0000 1.14e-36 6aeb:E, 6aeg:A
3 8ygj:B 136 78 0.8966 0.5735 1.0000 4.10e-36
4 8wus:B 115 78 0.8966 0.6783 1.0000 4.10e-36
5 7s36:R 87 87 0.9655 0.9655 0.9655 4.10e-36 8t6o:B
6 7z4g:A 91 77 0.8851 0.8462 1.0000 1.48e-35
7 8ye6:C 92 77 0.8851 0.8370 1.0000 1.48e-35 7z4h:A
8 5y36:B 99 77 0.8851 0.7778 1.0000 1.48e-35
9 8wuv:B 126 77 0.8851 0.6111 1.0000 1.48e-35
10 8wuu:B 111 77 0.8851 0.6937 1.0000 1.48e-35
11 8wut:B 112 77 0.8851 0.6875 1.0000 1.48e-35
12 8t78:B 89 77 0.8851 0.8652 1.0000 1.48e-35
13 8t77:B 89 77 0.8851 0.8652 1.0000 1.48e-35 8t79:B
14 8t6y:B 88 77 0.8851 0.8750 1.0000 1.48e-35
15 8t6t:B 95 77 0.8851 0.8105 1.0000 1.48e-35
16 8t6s:B 90 77 0.8851 0.8556 1.0000 1.48e-35 7z4c:A
17 8t6p:B 88 77 0.8851 0.8750 1.0000 1.48e-35 8t76:B, 8t7s:H, 7z4e:A, 7z4k:A
18 7s4v:B 98 77 0.8851 0.7857 1.0000 1.48e-35 7s4x:B, 8spq:B, 8sqh:B, 8srs:B, 8t7s:B, 8tzz:B, 8u3y:B, 7z4j:A
19 7s4u:B 97 77 0.8851 0.7938 1.0000 1.48e-35
20 4oo8:B 97 77 0.8851 0.7938 1.0000 1.48e-35 4oo8:E
21 6o0z:B 96 77 0.8851 0.8021 1.0000 1.48e-35 8t6x:B, 7z4i:A, 7z4l:A
22 6o0x:B 98 77 0.8851 0.7857 1.0000 1.48e-35 6o0y:B
23 8kal:E 95 77 0.8851 0.8105 1.0000 1.48e-35
24 8kak:A 94 77 0.8851 0.8191 1.0000 1.48e-35 8kak:E, 8kal:A, 8kam:A
25 8kag:A 98 77 0.8851 0.7857 1.0000 1.48e-35
26 6ifo:D 90 77 0.8851 0.8556 1.0000 1.48e-35
27 6ifo:C 88 77 0.8851 0.8750 1.0000 1.48e-35 5xbl:B
28 8g1i:B 98 77 0.8851 0.7857 1.0000 1.48e-35
29 8ye9:C 90 77 0.8621 0.8333 0.9740 1.15e-31
30 5vw1:C 73 63 0.7241 0.8630 1.0000 8.94e-28
31 4un4:A 82 63 0.7241 0.7683 1.0000 8.94e-28 4un5:A
32 6k4s:A 80 63 0.7241 0.7875 1.0000 8.94e-28 6k4u:A
33 6k4p:A 82 63 0.7241 0.7683 1.0000 8.94e-28
34 5fw1:A 81 63 0.7241 0.7778 1.0000 8.94e-28 5fw2:A, 5fw3:A, 6k3z:A, 6k4q:A, 6k57:A, 4un3:A
35 5fq5:A 83 63 0.7241 0.7590 1.0000 8.94e-28
36 7zo1:A 85 62 0.7126 0.7294 1.0000 3.22e-27
37 6vpc:A 81 62 0.7126 0.7654 1.0000 3.22e-27
38 7v59:C 115 62 0.7126 0.5391 1.0000 3.22e-27 7v59:G
39 7qr1:A 83 62 0.7126 0.7470 1.0000 3.22e-27
40 7qr0:A 82 62 0.7126 0.7561 1.0000 3.22e-27
41 7ox8:A 84 62 0.7126 0.7381 1.0000 3.22e-27
42 7ox7:A 81 62 0.7126 0.7654 1.0000 3.22e-27
43 8fzt:B 69 62 0.7126 0.8986 1.0000 3.22e-27
44 5f9r:A 116 62 0.7126 0.5345 1.0000 3.22e-27 6mcb:B, 6mcc:B, 5vzl:B
45 4zt0:B 72 61 0.7011 0.8472 1.0000 1.16e-26 4zt0:D, 4zt9:B, 4zt9:D
46 7z4d:F 77 61 0.7011 0.7922 1.0000 1.16e-26
47 7z4d:A 75 61 0.7011 0.8133 1.0000 1.16e-26
48 7qr8:A 85 61 0.7011 0.7176 1.0000 1.16e-26
49 7qqw:A 81 61 0.7011 0.7531 1.0000 1.16e-26
50 7qqv:A 85 61 0.7011 0.7176 1.0000 1.16e-26
51 7qqs:A 84 61 0.7011 0.7262 1.0000 1.16e-26 7qqt:A, 7qqu:A, 7qqx:A, 7qqz:A, 7qr5:A
52 7qqq:A 83 61 0.7011 0.7349 1.0000 1.16e-26
53 7qqp:A 84 61 0.7011 0.7262 1.0000 1.16e-26 7qqr:A
54 7oxa:A 81 61 0.7011 0.7531 1.0000 1.16e-26
55 7ox9:A 84 61 0.7011 0.7262 1.0000 1.16e-26 7qqo:A, 7qr7:A
56 8kah:I 63 61 0.7011 0.9683 1.0000 1.16e-26 8kah:J, 8kai:I, 8kai:J, 8kaj:I, 8kaj:J
57 6ai6:B 81 61 0.7011 0.7531 1.0000 1.16e-26 5b2r:A, 5b2s:A, 5b2t:A
58 7s3h:R 30 30 0.3448 1.0000 1.0000 1.98e-09
59 7s37:R 46 30 0.3448 0.6522 1.0000 1.98e-09

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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