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BioLiP
>rna
cggccuccgaacgguaagagccuagcauguagaacugaugaugucauacuuauccugucccuuuuuuuucca

The query sequence (length=72) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8i0s:G 72 72 1.0000 1.0000 1.0000 6.92e-33 8i0t:G
2 8i0r:G 71 71 0.9861 1.0000 1.0000 2.49e-32
3 8ch6:g 76 75 1.0000 0.9474 0.9600 1.94e-28 7qtt:g
4 8i0u:G 79 79 1.0000 0.9114 0.9114 7.02e-23 8i0v:G
5 8i0p:G 63 67 0.8750 1.0000 0.9403 2.52e-22
6 5z56:G 77 77 0.9722 0.9091 0.9091 9.08e-22 5z57:G, 5z58:G
7 6ahd:G 77 77 0.9722 0.9091 0.9091 9.08e-22
8 7abi:Z 57 61 0.7917 1.0000 0.9344 5.46e-19
9 5yzg:G 88 37 0.5139 0.4205 1.0000 1.98e-13
10 5xjc:G 84 37 0.5139 0.4405 1.0000 1.98e-13
11 7abg:Z 47 51 0.6528 1.0000 0.9216 1.98e-13
12 6icz:G 84 36 0.5000 0.4286 1.0000 7.12e-13
13 8qo9:Z 46 51 0.6389 1.0000 0.9020 3.31e-11
14 8q7n:Z 31 31 0.4306 1.0000 1.0000 4.28e-10
15 7aav:Z 29 29 0.4028 1.0000 1.0000 5.54e-09 7abf:Z

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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