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BioLiP
>rna
cggcacguagcgcagccugguagcgcaccgucauggggugucgggggucggagguucaaauccucucgugccgacca

The query sequence (length=77) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4v5h:AV 77 77 1.0000 1.0000 1.0000 1.26e-35 4v6m:AV
2 7oiz:V 75 77 0.9740 1.0000 0.9740 9.80e-32 7oj0:V, 7p3k:V
3 3jbu:v 76 77 0.9610 0.9737 0.9610 4.56e-30 5np6:B
4 3jbv:W 75 75 0.9351 0.9600 0.9600 5.90e-29

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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