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BioLiP
>rna
cccggauagcucagggagagcaggggauugaaaauccccguguccuugguucgauuccgaguccgggcac

The query sequence (length=70) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8g2b:2w 70 70 1.0000 1.0000 1.0000 8.61e-32 7rq9:2w
2 9b00:2y 73 70 1.0000 0.9589 1.0000 8.61e-32 6cfj:2y, 8cvj:2y, 8cvk:2y, 8cvl:2y, 5doy:2y, 8ev6:2y, 8ev7:2y, 8g29:2y, 8g2a:2y, 8g2b:2y, 8g2c:2y, 8g2d:2y, 5j4b:2y, 5j4c:2y, 6nd5:2y, 7rq8:2y, 7rq9:2y, 8ud6:2y, 8ud7:2y, 8ud8:2y, 6uo1:2y, 8uvr:2y, 8uvs:2y, 5vp2:2y, 8vtu:2y, 8vtv:2y, 8vtx:2y, 1vy4:CY, 1vy5:CY, 4w2f:CY, 4w2g:CY, 4w2i:CY, 5w4k:2y, 5wis:2y, 5wit:2y, 4wpo:DY, 6xhv:2y, 6xhw:2y, 6xhy:2y, 4y4p:2y, 4z3s:2w, 4z3s:2y
3 9b00:2w 72 70 1.0000 0.9722 1.0000 8.61e-32 6cfj:2w, 8cvj:2w, 8cvk:2w, 8cvl:2w, 8ev6:2w, 8ev7:2w, 8g29:2w, 8g2a:2w, 8g2c:2w, 8g2d:2w, 5j4c:2w, 6nd5:2w, 8ud8:2w, 8uvr:2w, 8uvs:2w, 8vtu:2w, 8vtv:2w, 8vtx:2w, 1vy4:CW, 1vy5:CW, 4w2f:CW, 4w2g:CW, 4w2i:CW, 5w4k:2w, 5wis:2w, 5wit:2w, 4wpo:DW, 6xhv:2w, 6xhw:2w, 6xhy:2w, 4y4p:2w
4 7rq8:2w 69 69 0.9857 1.0000 1.0000 3.10e-31 8ud7:2w, 5vp2:2w
5 7rq9:1w 72 71 1.0000 0.9722 0.9859 4.01e-30 8ud6:1w, 8ud7:1w, 5vp2:1w
6 8g2b:1w 73 71 1.0000 0.9589 0.9859 4.01e-30
7 9b00:1w 74 71 1.0000 0.9459 0.9859 4.01e-30 9b00:1y, 6cfj:1w, 6cfj:1y, 8cvj:1w, 8cvj:1y, 8cvk:1w, 8cvk:1y, 8cvl:1w, 8cvl:1y, 5doy:1y, 8ekc:w, 8ev6:1w, 8ev6:1y, 8ev7:1w, 8ev7:1y, 8fzd:y, 8fze:y, 8fzf:x, 8fzg:y, 8fzh:y, 8g29:1w, 8g29:1y, 8g2a:1w, 8g2a:1y, 8g2b:1y, 8g2c:1w, 8g2c:1y, 8g2d:1w, 8g2d:1y, 6hcj:q3, 6hcq:q3, 5j4b:1w, 5j4b:1y, 5j4c:1w, 5j4c:1y, 3j7r:S5, 5j8b:w, 5j8b:y, 6nd5:1w, 6nd5:1y, 7rq8:1y, 7rq9:1y, 8syl:w, 6ucq:1x, 6ucq:1y, 6ucq:2x, 8ud6:1y, 8ud7:1y, 8ud8:1w, 8ud8:1y, 6uo1:1y, 8uu5:x, 8uu7:y, 8uvr:1w, 8uvr:1y, 8uvs:1w, 8uvs:1y, 4v8y:CW, 4v9h:AV, 5vp2:1y, 8vtu:1w, 8vtu:1y, 8vtv:1w, 8vtv:1y, 8vtx:1w, 8vtx:1y, 1vy4:AW, 1vy4:AY, 1vy5:AW, 1vy5:AY, 4w2e:x, 4w2f:AW, 4w2f:AY, 4w2g:AW, 4w2g:AY, 4w2i:AW, 4w2i:AY, 5w4k:1w, 5w4k:1y, 5wis:1w, 5wis:1y, 5wit:1w, 5wit:1y, 4wpo:BW, 4wpo:BY, 6xhv:1w, 6xhv:1y, 6xhw:1w, 6xhw:1y, 6xhy:1w, 6xhy:1y, 4y4p:1w, 4y4p:1y, 4z3s:1w, 4z3s:1y
8 7rq8:1w 71 70 0.9857 0.9718 0.9857 1.44e-29 6uo1:1w
9 5doy:2w 74 72 1.0000 0.9459 0.9722 5.18e-29
10 5doy:1w 75 72 1.0000 0.9333 0.9722 5.18e-29
11 4v90:AV 76 73 1.0000 0.9211 0.9589 2.41e-27
12 6uz7:3 76 73 1.0000 0.9211 0.9589 2.41e-27
13 7s1g:A 76 73 1.0000 0.9211 0.9589 2.41e-27 7s1i:A, 7s1k:A
14 3j9z:S7 74 73 1.0000 0.9459 0.9589 2.41e-27 2zm5:C, 2zxu:C
15 6htq:w 75 73 1.0000 0.9333 0.9589 2.41e-27
16 6htq:u 76 73 1.0000 0.9211 0.9589 2.41e-27 5iqr:6, 8peg:W
17 5afi:y 76 73 1.0000 0.9211 0.9589 2.41e-27 4v5c:AY, 4v5c:CY, 4v5d:AV, 4v5d:AY, 4v5d:CV, 4v5d:CY, 4v5j:AV, 4v5j:AW, 4v5j:CV, 4v5j:CW
18 5aa0:BD 75 73 1.0000 0.9333 0.9589 2.41e-27 5aa0:BE, 6c5l:AW, 6c5l:CW, 5tcu:E, 6wd7:7
19 5aa0:BC 76 73 1.0000 0.9211 0.9589 2.41e-27 7abz:7, 7ac7:7, 5aj0:Bv, 5aj0:Bw, 8akn:X, 7azo:ASIA, 7azo:PSIA, 7azo:ESIA, 7azo:ASIB, 7azo:PSIB, 7azo:ESIB, 7azs:ASIA, 7azs:PSIA, 7azs:ESIA, 7azs:ASIB, 7azs:PSIB, 7azs:ESIB, 6bu8:Y, 6c5l:AV, 6c5l:CV, 8cd1:Dt, 8fzd:x, 8fze:x, 8fzg:x, 8fzh:x, 8g5z:At, 8g60:At, 8g61:At, 8g6j:At, 8hky:AATN, 8hky:AETN, 8hkz:AETN, 8hl1:APTN, 8hl1:AETN, 8hl2:APTN, 8hl2:AETN, 8hl3:APTN, 8hl4:APTN, 8hl5:AATN, 8hl5:APTN, 8ifb:5, 8ifc:5, 5imq:5, 5imr:5, 5iqr:4, 3j0l:W, 3j0o:W, 3jcd:8, 3jcd:9, 3jce:6, 3jce:9, 5kpv:30, 5kpw:30, 5kpx:30, 7lh5:AW, 7lh5:CW, 7mdz:2, 5mmm:z, 7n1p:Dt, 7n31:Dt, 5ndj:W1, 5ndj:X1, 5ndj:V1, 5ndj:W4, 5ndj:X4, 5ndj:V4, 5ndk:W1, 5ndk:X1, 5ndk:V1, 5ndk:W4, 5ndk:X4, 5ndk:V4, 5o61:BW, 6o9j:v, 6olg:Bv, 6olz:Bv, 5ot7:2, 4p6f:QW, 4p6f:XW, 6qnr:1K, 6qnr:2K, 6qnr:3K, 6qnr:1L, 6qnr:2L, 6qnr:3L, 7qvp:B4, 5tcu:D, 7ug7:Pt, 4ujc:AA, 4ujd:BA, 4uje:AV, 4uje:AW, 5uq7:z, 5uq8:z, 5uyk:Y, 5uyl:Y, 5uym:Y, 4v4i:z, 4v4y:AC, 4v4y:AD, 4v51:AW, 4v51:CW, 4v5c:AW, 4v5c:CW, 4v5d:AW, 4v5d:CW, 4v5e:AV, 4v5e:AW, 4v5e:CV, 4v5e:CW, 4v5g:AV, 4v5g:AW, 4v5g:CV, 4v5g:CW, 4v5l:AV, 4v5l:AW, 4v5p:AV, 4v5p:AW, 4v5p:CV, 4v5p:CW, 4v5q:AV, 4v5q:AW, 4v5q:CV, 4v5q:CW, 4v5r:AV, 4v5r:AW, 4v5r:CV, 4v5r:CW, 4v5s:AV, 4v5s:AW, 4v5s:CV, 4v5s:CW, 4v68:AW, 4v69:AW, 4v6f:BD, 4v6f:BB, 4v6f:BC, 4v6f:CD, 4v6f:CB, 4v6f:CC, 4v6k:BB, 4v6l:AB, 4v6l:AE, 4v7c:AV, 4v8j:AW, 4v8j:CW, 4v8u:AV, 4v8u:CV, 4v97:AW, 4v97:CW, 4v9c:AV, 4v9c:CV, 4v9d:AV, 4v9d:BV, 4v9i:AW, 4v9i:CW, 6vwn:5, 4w2e:w, 5wdt:y, 6wd2:7, 6wd3:7, 6wd4:7, 6wd5:7, 6wd6:7, 6wd8:7, 6wd9:7, 6wda:7, 6wdd:7, 6wde:7, 6wdj:7, 6wdl:7, 6wdm:7, 5we4:y, 5we6:y, 5wf0:y, 5wfk:y, 5wfs:y, 4woi:AX, 4woi:DW, 4wqf:BW, 4wqf:DW, 4wqr:1K, 4wqr:3K, 4wqr:1L, 4wqr:3L, 4wqu:BW, 4wro:3K, 4wsd:1K, 4wsd:3L, 4wt1:1K, 4wt1:3K, 4wt1:1L, 4wt1:3L, 4wt8:C3, 4wt8:D3, 4wzo:3K, 4wzo:3L, 6y0g:B4, 6y2l:B4, 6y4b:F, 6ztj:AX, 6ztm:AX, 6ztn:AX, 6ztn:AZ
20 4wro:1K 74 72 0.9857 0.9324 0.9583 8.67e-27
21 7azo:TRNA 73 72 0.9857 0.9452 0.9583 8.67e-27 4v8m:AB, 6wdb:7, 6wdc:7, 6wdi:7
22 4wsd:3K 75 73 0.9857 0.9200 0.9452 1.12e-25
23 7pjs:w 76 73 0.9857 0.9079 0.9452 1.12e-25 7pjt:w, 7pjv:w, 7pjx:w, 7pjy:w, 7pjz:w, 6ysr:w, 6yss:w, 6yst:w, 6ysu:w
24 7osm:ASIT 76 73 0.9857 0.9079 0.9452 1.12e-25
25 7n2c:Dt 76 73 0.9857 0.9079 0.9452 1.12e-25 7n2u:Dt, 7n2v:Dt, 7n30:Dt
26 3foz:C 74 73 0.9857 0.9324 0.9452 1.12e-25
27 3foz:D 69 69 0.9429 0.9565 0.9565 4.04e-25
28 2zm5:D 69 68 0.9286 0.9420 0.9559 1.45e-24 2zxu:D
29 6zj3:S4 76 71 0.9571 0.8816 0.9437 1.45e-24
30 4yco:D 74 71 0.9571 0.9054 0.9437 1.45e-24
31 6az1:2 76 71 0.9571 0.8816 0.9437 1.45e-24 6az1:4, 8rxh:S2, 6zj3:S2
32 4v8z:CW 76 73 0.9714 0.8947 0.9315 5.22e-24
33 4yco:F 71 66 0.9000 0.8873 0.9545 1.88e-23
34 4yco:E 67 66 0.9000 0.9403 0.9545 1.88e-23
35 4v5z:BZ 72 72 0.9571 0.9306 0.9306 1.88e-23
36 3j7r:S6 76 58 0.8143 0.7500 0.9828 1.88e-23
37 7zux:6 76 73 0.9571 0.8816 0.9178 2.43e-22
38 6q95:8 76 73 0.9571 0.8816 0.9178 2.43e-22
39 6zj3:S3 76 71 0.9286 0.8553 0.9155 3.14e-21
40 8rxh:S4 74 71 0.9286 0.8784 0.9155 1.13e-20
41 6ole:u 76 73 0.9429 0.8684 0.9041 1.13e-20 6olf:u, 6oli:u, 6om0:u, 7qgg:u
42 6ole:v 76 58 0.7714 0.7105 0.9310 1.89e-18 6olf:v, 6oli:v, 6om0:v, 6om7:v, 7qgg:v, 6w6l:v
43 8qfs:B 61 32 0.4571 0.5246 1.0000 1.15e-10 8qhc:B
44 8r3v:W1 36 38 0.5143 1.0000 0.9474 4.12e-10 8rcl:W1, 8rcm:W1

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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