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BioLiP
>rna
ccccucccgggagagccauaguggucugcggaaccggugaguacaccggaauugcgagauuugggcgugcccccgcgaga
cugcuagccgaguaguguugggucgcgaaaggccuugugguacugccugauagggugcuugcgagugccccgggaggucu
cgu

The query sequence (length=163) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6ip6:zz 163 163 1.0000 1.0000 1.0000 4.83e-83 6ip8:zz
2 5oa3:3 186 163 0.9939 0.8710 0.9939 2.25e-81
3 5a2q:3 257 163 0.9939 0.6304 0.9939 2.25e-81
4 4ujc:AC 261 163 0.9632 0.6015 0.9632 2.28e-71 4ujd:BC
5 7syv:z 258 163 0.9632 0.6085 0.9632 2.28e-71
6 7syr:z 188 163 0.9632 0.8351 0.9632 2.28e-71 7sys:z, 7syt:z, 7syu:z, 7syw:z, 7syx:z
7 7syp:z 249 163 0.9632 0.6305 0.9632 2.28e-71
8 7syo:z 166 163 0.9632 0.9458 0.9632 2.28e-71
9 7syg:z 162 163 0.9632 0.9691 0.9632 2.28e-71 7syh:z, 7syi:z, 7syj:z, 7syk:z, 7syl:z, 7sym:z, 7syn:z
10 5flx:z 264 163 0.9632 0.5947 0.9632 2.28e-71 7syq:z

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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