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BioLiP
>rna
cccccccucccgggagagccauaguggucugcggaaccggugaguacaccggaaugauuugggcgugcccccgcaagacu
gcuagccgaguaguguugggucgcgaaaggccuugugguacugccugauagggugcuugcgagugccccgggaggucucg
ua

The query sequence (length=162) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4ujc:AC 261 162 1.0000 0.6207 1.0000 1.72e-82 4ujd:BC
2 7syv:z 258 162 1.0000 0.6279 1.0000 1.72e-82
3 7syr:z 188 162 1.0000 0.8617 1.0000 1.72e-82 7sys:z, 7syt:z, 7syu:z, 7syw:z, 7syx:z
4 7syp:z 249 162 1.0000 0.6506 1.0000 1.72e-82
5 7syo:z 166 162 1.0000 0.9759 1.0000 1.72e-82
6 7syg:z 162 162 1.0000 1.0000 1.0000 1.72e-82 7syh:z, 7syi:z, 7syj:z, 7syk:z, 7syl:z, 7sym:z, 7syn:z
7 5flx:z 264 162 1.0000 0.6136 1.0000 1.72e-82 7syq:z
8 5oa3:3 186 167 1.0000 0.8710 0.9701 2.91e-75
9 5a2q:3 257 167 1.0000 0.6304 0.9701 2.91e-75
10 6ip6:zz 163 163 0.9691 0.9632 0.9632 2.26e-71 6ip8:zz

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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