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BioLiP
>rna
cacgccccgccggcggaugccucggcccgggcggcgacgaagagcgcggcggagcgcgagacgcggugcggacccgcccg
ccccgagaagcaccgauccucgaacgcagcgcgccccggcgccgccgccucggcgccugc

The query sequence (length=140) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8bsj:LD 140 140 1.0000 1.0000 1.0000 2.47e-70
2 8br8:LD 142 140 1.0000 0.9859 1.0000 2.47e-70 8brm:LD, 8btd:LD, 8btr:LD
3 8bsi:LD 137 139 0.9786 1.0000 0.9856 6.92e-66
4 7pwg:4 138 136 0.9571 0.9710 0.9853 3.22e-64 7pwo:42
5 8fru:4 141 140 0.9714 0.9645 0.9714 4.17e-63

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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