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BioLiP
>rna
caccuaauuucgaauccagcaugagaagcu

The query sequence (length=30) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8yhe:N 30 30 1.0000 1.0000 1.0000 3.79e-10
2 8z9c:N 41 29 0.9667 0.7073 1.0000 1.36e-09
3 8z99:N 46 29 0.9667 0.6304 1.0000 1.36e-09
4 8z4l:N 40 29 0.9667 0.7250 1.0000 1.36e-09
5 8z4j:N 34 29 0.9667 0.8529 1.0000 1.36e-09 8z9e:N
6 8yhd:N 35 29 0.9667 0.8286 1.0000 1.36e-09
7 8z9e:M 39 28 0.9333 0.7179 1.0000 4.91e-09
8 8z9c:M 48 28 0.9333 0.5833 1.0000 4.91e-09
9 8z99:M 54 28 0.9333 0.5185 1.0000 4.91e-09
10 8z4l:M 49 28 0.9333 0.5714 1.0000 4.91e-09
11 8z4j:M 38 28 0.9333 0.7368 1.0000 4.91e-09
12 8yhe:M 46 28 0.9333 0.6087 1.0000 4.91e-09
13 8yhd:M 53 28 0.9333 0.5283 1.0000 4.91e-09

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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