>rna
auuuuaccaauuaagaagaauauuauaauaaugggugucuuauauuuuaaauaaauauuuaaauuccguguaguaaauuu
auuauuuguauuauuuauauaauagguguauuauauuuaaauuuuaaauuuguuguuuuauauuuagauacauauuuaua
gauuaauauauuuaaauaauauuuuaaaauuuauuguuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuu
uuuuuuuuuuuuuuuuuuuuuuuuuuuaauaaauauaguaagauuauuuuaguugaauuaauaaauaaauauuuauuuuu
cuuuguaaauauuaugaacaauuuaaaaauuaaucuguuuaacuaaaauguuauauauaauaaucaguauuuuaauggua
uauuuuuaguagguaaaugaaaaguauaaauggauauaacuuaauauuuaauauuuguuuaaugaaaaguauuuuauuau
uauauuguauaguauuauuauaguguauaguuuuuuaaaaauauaaaaauauuguuaaaacaaauaaaauaaaguaugaa
uuaauaucaaaauuuuaauaaaaauuaaaaaauuaaaauagggcaaguccuacucuccuuuacaaagagaacauuaugau
auguaauuguauguuugauuggggcaauacuauauuuauuuauauagcauaagaacuauauucuuugaaauuauaaaagg
uucgagcagguuaacaagcauuaaaaauaaauguguuucaucgucuacuuauuauuuuuuuuuuuuuuuuuguuggguuc
guuguaaagcagauuuguuuauauauuuaauuuuuauaauuaauaauaauuaauauaaguacgcaaggauugauuauuga
aaaaagaaagaagaauauaauuua

The query sequence (length=904) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

#	Hit	Hit length	Aligned length	Identity (normalized by query)	Identity (normalized by hit)	Identity (normalized by aligned length)	E-value	Homologs to hit
1	6yxx:AA	904	904	1.0000	1.0000	1.0000	0.0
2	6yxy:AA	903	908	0.9535	0.9546	0.9493	0.0
3	7aoi:AA	758	474	0.4613	0.5501	0.8797	1.63e-144
4	7aoi:AA	758	196	0.2168	0.2586	1.0000	1.34e-100
5	7aoi:AA	758	106	0.1128	0.1346	0.9623	8.73e-43
6	6hiv:AA	591	196	0.2168	0.3316	1.0000	1.34e-100	6hix:AA
7	6hiv:AA	591	314	0.2887	0.4416	0.8312	1.09e-66	6hix:AA
8	7aih:1	1087	239	0.2412	0.2006	0.9121	2.28e-88
9	7ane:1	1084	239	0.2378	0.1983	0.8996	8.25e-83
10	3iy9:A	1027	239	0.2356	0.2074	0.8912	4.96e-80
11	7am2:1	797	212	0.1958	0.2221	0.8349	6.70e-49

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