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BioLiP
>rna
auucucucuuugccuuuuggcuuagaucaaguguaguaucuguaucuuguuuuugguuuuuggaaagccucugggcuaug
cuuuccucuugcuauugcacuacuggcaagc

The query sequence (length=111) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3jb9:P 111 111 1.0000 1.0000 1.0000 2.51e-54
2 5lj3:Z 171 46 0.4054 0.2632 0.9783 5.71e-16 5lj5:Z
3 7b9v:2 196 46 0.4054 0.2296 0.9783 5.71e-16
4 5wsg:L 91 44 0.3874 0.4725 0.9773 7.38e-15 5ylz:F
5 5mq0:2 155 44 0.3874 0.2774 0.9773 7.38e-15
6 5mps:2 49 44 0.3874 0.8776 0.9773 7.38e-15
7 5lqw:2 81 44 0.3874 0.5309 0.9773 7.38e-15
8 6j6q:L 210 44 0.3874 0.2048 0.9773 7.38e-15
9 6j6h:L 209 44 0.3874 0.2057 0.9773 7.38e-15
10 6j6g:L 208 44 0.3874 0.2067 0.9773 7.38e-15
11 5gmk:L 127 44 0.3874 0.3386 0.9773 7.38e-15
12 5gm6:L 66 44 0.3874 0.6515 0.9773 7.38e-15
13 6exn:2 136 44 0.3874 0.3162 0.9773 7.38e-15
14 7dco:H 169 44 0.3874 0.2544 0.9773 7.38e-15
15 6j6n:L 205 39 0.3514 0.1902 1.0000 2.66e-14
16 6bk8:2 135 43 0.3784 0.3111 0.9767 2.66e-14
17 5y88:F 82 52 0.4324 0.5854 0.9231 9.55e-14

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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