>rna
auuccgguugauccugccggacccgaccgcuaucgggguagggauaagccaugggagucuuacacucccggguaagggag
uguggcggacggcugaguaacacguggcuaaccuacccucgggacggggauaaccccgggaaacuggggauaauccccga
uagggaaggaguccuggaaugguuccuucccuaaagggcuauaggcuauuucccguuuguagcgcccgaggauggggcua
cggcccaucaggcugucggugggguaaaggcccaccgaaccuauaacggguaggggccguggaagcgggagccuccaguu
gggcacugagacaagggcccaggcccuacggggcgcaccaggcgcgaaacguccccaaugcgcgaaagcgugagggcgcu
accccgagugccuccgcaggaggcuuuuccccgcucuaaaaaggcgggggaauaagcggggggcaagucuggugucagcc
gccgcgguaauaccagcuccgcgaguggucggggugauuacugggccuaaagcgccuguagccggcccaccaagucgccc
cuuaaaguccccggcucaaccggggaacugggggcgauacuggugggcuagggggcgggagaggcgggggguacucccgg
aguaggggcgaaauccuuagauaccgggaggaccaccaguggcggaagcgccccgcuagaacgcgcccgacggugagagg
cgaaagccgggggucccggcuguaaacgaugcgggcuaggugucgaguaggcuuagagccuacucggugccgcagggaag
ccguuaagcccgccgccuggggaguacggucgcaagacugaaacuuaaaggaauuggcgggggagcaccacaaggggugg
aaccugcggcucaauuggagucaacgccuggaaucuuaccggggagaccgcaguaugacggccaggcuaacgaccuugcc
ugacucgcggagaggaggugcauggccgucgccagcucguguugugaaauguccgguuaaguccggcaacgagcgagacc
cccaccccuaguugguauucuggacuccgguccagaaccacacuagggggacugccggcguaagccggaggaaggagggg
gccacggcaggucagcaugccccgaaaccgggccgcacgcggguuacaauggcagggacaacgggaugcuaccucgaaag
ggggagccaauccuuaaacccugccgcaguugggaucgagggcugaaacccgcccucgugaacgaggaaucccuaguaac
cgcgggucaacaacccgcggugaauacgucccugcuccuugcaca

The query sequence (length=1325) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

#	Hit	Hit length	Aligned length	Identity (normalized by query)	Identity (normalized by hit)	Identity (normalized by aligned length)	E-value	Homologs to hit
1	8wkp:A16S	1325	1325	1.0000	1.0000	1.0000	0.0
2	8wq4:A16S	1325	1326	0.9992	0.9992	0.9985	0.0
3	8wq2:A16S	1328	1328	1.0000	0.9977	0.9977	0.0
4	8hl2:A16S	1492	733	0.5525	0.4906	0.9986	0.0	8hl3:A16S, 8hl4:A16S, 8hl5:A16S
5	8hl2:A16S	1492	603	0.4498	0.3995	0.9884	0.0	8hl3:A16S, 8hl4:A16S, 8hl5:A16S
6	8hky:A16S	1493	733	0.5525	0.4903	0.9986	0.0	8hkz:A16S, 8hl1:A16S
7	8hky:A16S	1493	603	0.4506	0.3999	0.9900	0.0	8hkz:A16S, 8hl1:A16S
8	8hkx:A16S	1491	733	0.5525	0.4909	0.9986	0.0
9	8hkx:A16S	1491	601	0.4506	0.4004	0.9933	0.0
10	5jb3:2	1495	1286	0.7585	0.6722	0.7815	0.0	5jbh:2, 4v4n:B2, 4v6u:A2
11	6sw9:2	1497	1289	0.7592	0.6720	0.7804	0.0	6swc:2, 7zag:2, 7zah:2, 7zai:2, 7zhg:2
12	6tmf:A	1485	1283	0.7494	0.6687	0.7740	0.0
13	6skg:Aa	1463	1366	0.7879	0.7136	0.7643	0.0
14	6skf:Aa	1463	1366	0.7872	0.7129	0.7635	0.0	6th6:Aa
15	6swd:2	1044	818	0.4762	0.6044	0.7714	1.93e-120
16	8buu:a	1538	534	0.2868	0.2471	0.7116	2.85e-24
17	7qv2:a	1545	538	0.2883	0.2472	0.7100	1.33e-22
18	3j9w:AA	1544	538	0.2883	0.2474	0.7100	1.33e-22	5njt:A, 7qgu:W, 7qh4:W
19	6ha1:a	1533	538	0.2883	0.2492	0.7100	1.33e-22	6ha8:a, 6htq:a, 7o5b:A, 8qcq:a, 8qpp:A, 7qv1:a, 7qv3:a, 8r55:A
20	8cdu:A	1333	526	0.2815	0.2798	0.7091	7.98e-20	8cec:A, 8ced:A, 8cee:A
21	8cdv:A	1247	294	0.1608	0.1708	0.7245	1.34e-17

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