BioLiP

>rna
augcgaaagcaguugaagacaagugcuugucguucguuaaaauggccucgucaaacgguggagagagucgcuaggugauc
gucagaucugccuagucucuauacagcguguuuaauugacauggguugaugcguauugagagauacaauuugggaagaaa
uucccagaguguguuucuuuugcguuuaaccugaacagucucaucgugggcaucuugcgauuccauuggugagcagcgaa
ggauuugguggauuacuagcuaauagcaaucuauuucaaagaauucaaacuugggggaaugccuuguugaauagccgguc
gcaagacugugauucuucaaguguaaccuccucucaaaucagcgauaucaaacguaccccgugaaacaccgggguaucug
uuugguggaaccugauuagaggaaacucaaagagugcuaugguauggugacggagugcgcuggucaagaguguaaaagcu
uuuugaacagagagcauuuccggcagcagagauuucagcuguu

The query sequence (length=523) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

#	Hit	Hit length	Aligned length	Identity (normalized by query)	Identity (normalized by hit)	Identity (normalized by aligned length)	E-value	Homologs to hit
1	6zqa:D2	523	523	1.0000	1.0000	1.0000	0.0
2	6zqb:D2	522	522	0.9981	1.0000	1.0000	0.0
3	7d5s:5A	523	523	0.9962	0.9962	0.9962	0.0	6lqp:5A, 6lqu:5A
4	6ke6:5A	522	523	0.9943	0.9962	0.9943	0.0
5	7ajt:D2	446	446	0.8528	1.0000	1.0000	0.0	6zqc:D2
6	7suk:L0	488	509	0.9331	1.0000	0.9587	0.0	5wlc:L0
7	5wyj:5A	462	253	0.4474	0.5065	0.9249	2.14e-96	5wyk:5A
8	5wyj:5A	462	222	0.3786	0.4286	0.8919	1.34e-68	5wyk:5A
9	6nd4:0	408	299	0.5067	0.6495	0.8863	6.00e-92
10	6nd4:0	408	112	0.1969	0.2525	0.9196	2.33e-36
11	6nd4:0	408	36	0.0669	0.0858	0.9722	1.12e-09
12	6lqq:5A	375	133	0.2543	0.3547	1.0000	8.04e-66
13	6lqq:5A	375	102	0.1950	0.2720	1.0000	1.37e-48
14	6lqq:5A	375	61	0.1147	0.1600	0.9836	1.42e-23
15	6lqq:5A	375	29	0.0554	0.0773	1.0000	5.23e-08
16	7d63:5A	192	103	0.1969	0.5365	1.0000	3.82e-49	6lqr:5A
17	7d63:5A	192	40	0.0765	0.2083	1.0000	4.01e-14	6lqr:5A
18	7aju:D2	81	51	0.0975	0.6296	1.0000	3.08e-20	6zqd:D2, 6zqe:D2
19	7d4i:5A	118	52	0.0975	0.4322	0.9808	1.43e-18
20	6lqv:5A	171	43	0.0822	0.2515	1.0000	8.63e-16
21	6lqv:5A	171	40	0.0765	0.2339	1.0000	4.01e-14
22	6lqv:5A	171	39	0.0746	0.2281	1.0000	1.44e-13
23	6lqs:5A	152	41	0.0784	0.2697	1.0000	1.12e-14	6lqt:5A
24	6lqs:5A	152	33	0.0631	0.2171	1.0000	3.13e-10	6lqt:5A

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