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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>rna
aucagguugauucugccugacguggaugcuauucucuggggcuaagccaugcaugcuugugaacucuuugugggggauua
gcggacggcucagugauagcacgaugauuuguuugcgggaugagcaguagcugcgggaaacugcagauaguggucugccc
cuguggggguuggcaaguaaguugugggccuaucagcugguaguuaggguaauggccuaacuaggcgcagacgggauacg
ggggaucaggguuugguuccggagagggagccugagagauggcuacuacguccaaggauggcagcaggcgcgaaacuugc
cuaauccuuuggggaggcgguuaugagaagugaugugugugcgagugcaaaggggucgcaugugauuggagggcaagucg
ggugccagcagccgcgguaauaccugcuccaauagugucuaugguggaugcugcaguuaaaauguccguagucuguguau
gucuuugugugugauguuugugguuguguguggauguagugaguguguggcagaggacgaggggcacuggauaguugggc
gagaggugaaaugcgaagacccugacuggacgagcggaagcgaaggcugugcucuuggacuaauguugcgaugaaggacg
aaggcuagaggaucgaaaucgauuagauaccguuuuaguucuagcaguaaacgaugccgacuggacgggacagugugugu
uguccaugagaaaucuugaguaugcggguucuggggauaguaugcucgcaagagugaaacuugaagagauugacggaagg
acaccacaaggaguggagugugcggcuuaauuugacucaacgcggggcaacuuaccggcucugaaggaugccugugagug
cauggcaugaggcaugcggcgguggugcauggccguuuuaaauggauggcgugagcuuugucuuaaguugcguaagaugu
gagacccuuugacgguguucuacggagcaaggaggggauggaagagaacagguccguuaugcccugagaugaggcgggcu
gcacgcgcacuacgauagauggcgcuucugccugcugugagggaugaagcuguguaaggggcuucugaacguggaauucc
uaguaauagcggcugacgaagcugcuuugaaugugucccuguccuuuguacacaccgcccgucgcuaucuaagaugacgc
acuggacgaagaucggaaggucugaguccugaguguuagauaagauauaagucguaacauggcugcuguuggagaaccag
cagcaggaucaguau

The query sequence (length=1295) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7qep:3 1295 1295 1.0000 1.0000 1.0000 0.0
2 6zu5:S60 1336 305 0.1931 0.1871 0.8197 1.57e-66
3 6rm3:S60 1231 325 0.2015 0.2120 0.8031 1.22e-62
4 8p5d:S60 1354 695 0.3954 0.3781 0.7367 7.37e-60 8p60:S60, 8p60:R60, 7qca:S60
5 8p5d:S60 1354 53 0.0355 0.0340 0.8679 2.85e-09 8p60:S60, 8p60:R60, 7qca:S60

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218