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BioLiP
>rna
aguucggccauccuacggcggaaacuccuuaacucguuccgaauuaagaagagaagcgccgucaggccccgccaguacug
cgaucggagacgucgugggaacacggggugccgaacu

The query sequence (length=117) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8fru:3 117 117 1.0000 1.0000 1.0000 1.24e-57
2 7pwg:3 117 116 0.9915 0.9915 1.0000 4.44e-57 7pwo:3
3 8br8:LE 117 117 0.9915 0.9915 0.9915 5.75e-56 8brm:LE, 8btd:LE, 8btr:LE
4 8bsj:LE 116 116 0.9829 0.9914 0.9914 2.07e-55
5 8bsi:LE 115 115 0.9744 0.9913 0.9913 7.43e-55

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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