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BioLiP
>rna
agugguaaugcgaaacacugccagguaacaaaucaauccucccacggugagcuuucuuuucaccauaauccaccuugggc
cuuuuaccgcguuguucggagcgggggcucaagauugaaaaaugcagcucuacguacuguugugaguucugcgcauuaac
gcaaaaaccuggggugu

The query sequence (length=177) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6az3:3 177 177 1.0000 1.0000 1.0000 8.74e-91
2 8rxh:L3 183 184 0.9774 0.9454 0.9402 4.16e-74 8rxx:L3
3 5t2a:E 169 177 0.9322 0.9763 0.9322 5.41e-68
4 8a98:3 161 157 0.8362 0.9193 0.9427 1.96e-62
5 8ova:BE 188 186 0.9266 0.8723 0.8817 9.19e-56
6 8a3w:3 153 108 0.6045 0.6993 0.9907 3.33e-50
7 8ove:BE 166 159 0.7910 0.8434 0.8805 2.00e-47
8 8ovj:3 156 111 0.6045 0.6859 0.9640 2.59e-46
9 5t5h:E 146 108 0.5650 0.6849 0.9259 5.65e-38
10 4v8m:BE 210 210 0.9266 0.7810 0.7810 2.08e-22
11 3jcs:3 184 194 0.8588 0.8261 0.7835 2.68e-21

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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