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BioLiP
>rna
aggggcguaguucaauugguagagcaccgguuuccaaaaccggguguugggaguucgagucucuccgccccugcca

The query sequence (length=76) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8pkl:W 76 76 1.0000 1.0000 1.0000 4.45e-35 8r3v:W, 8rcl:W, 8rcm:W, 8rcs:W, 8rct:W
2 4v6n:BB 76 76 0.9868 0.9868 0.9868 2.07e-33 4v6o:AB, 4v6p:AB, 4v6q:AB, 4v6r:AB
3 4v5r:AY 77 76 0.9868 0.9740 0.9868 2.07e-33 4v5r:CY
4 4v5p:AY 77 76 0.9737 0.9610 0.9737 9.63e-32 4v5p:CY
5 4v5l:AY 77 76 0.9737 0.9610 0.9737 9.63e-32 4v5q:AY, 4v5q:CY, 4v5s:AY, 4v5s:CY
6 4ycp:B 62 65 0.8158 1.0000 0.9538 7.55e-23

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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