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BioLiP
>rna
agcuuugcgcaguggcaguaucguagccaaugaggucuauccgaggcgcgauuugcuaauugaaaacuucccaauagccg
ugacgacuagucggcacuggcaauuuuugacagucucgagacugg

The query sequence (length=125) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8h6e:4A 125 125 1.0000 1.0000 1.0000 4.72e-62
2 8qxd:4 124 124 0.9920 1.0000 1.0000 1.70e-61 8r08:4, 8r0a:4
3 8h6j:4A 125 125 0.9920 0.9920 0.9920 7.89e-60
4 6qw6:4 125 125 0.9840 0.9840 0.9840 1.02e-58 6qx9:4
5 8r09:4 128 128 0.9920 0.9688 0.9688 6.15e-56 8r0b:4
6 8qo9:4 127 130 0.9440 0.9291 0.9077 4.85e-42
7 8qp8:4 76 76 0.6080 1.0000 1.0000 8.18e-35 8qp9:4, 8qpk:4
8 8rm5:4 110 124 0.8800 1.0000 0.8871 2.94e-34
9 6ahd:I 136 138 0.9520 0.8750 0.8623 3.80e-33 8qzs:4
10 5o9z:4 137 139 0.9440 0.8613 0.8489 2.29e-30
11 8qoz:4 80 80 0.6080 0.9500 0.9500 2.96e-29 8qpb:4
12 8h6k:4A 128 134 0.9120 0.8906 0.8507 2.96e-29 8h6l:4A
13 6ah0:I 117 125 0.8400 0.8974 0.8400 6.41e-26
14 8qpe:4 63 63 0.4880 0.9683 0.9683 1.07e-23
15 8qpa:4 62 62 0.4800 0.9677 0.9677 3.86e-23
16 8q7n:4 76 62 0.4720 0.7763 0.9516 1.80e-21

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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