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BioLiP
>rna
agcuuugcgcaguggcaguaucguagccaaugaggucuauccgaggcgcgauuauugcuaauuacuuuucccaauacccc
gccgugacgacuugcaauauagucggcacuggcaauuuuugacagucucgagacug

The query sequence (length=136) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6ahd:I 136 136 1.0000 1.0000 1.0000 4.00e-68 8qzs:4
2 5o9z:4 137 136 0.9853 0.9781 0.9853 8.66e-65
3 8h6k:4A 128 136 0.9412 1.0000 0.9412 1.47e-52 8h6l:4A
4 8qo9:4 127 136 0.9338 1.0000 0.9338 2.46e-50
5 8r09:4 128 140 0.9118 0.9688 0.8857 3.23e-39 8r0b:4
6 8h6j:4A 125 138 0.8824 0.9600 0.8696 9.03e-35
7 8qxd:4 124 138 0.8750 0.9597 0.8623 4.20e-33 8r08:4, 8r0a:4
8 8h6e:4A 125 138 0.8750 0.9520 0.8623 4.20e-33
9 8q7n:4 76 77 0.5515 0.9868 0.9740 1.96e-31
10 6qw6:4 125 138 0.8603 0.9360 0.8478 9.10e-30 6qx9:4
11 8qoz:4 80 80 0.5588 0.9500 0.9500 3.27e-29 8qpb:4
12 6ah0:I 117 136 0.8529 0.9915 0.8529 3.27e-29
13 8qpe:4 63 63 0.4632 1.0000 1.0000 1.52e-27
14 8rm5:4 110 62 0.4559 0.5636 1.0000 5.48e-27
15 8rm5:4 110 37 0.2721 0.3364 1.0000 4.32e-13
16 8qpa:4 62 62 0.4559 1.0000 1.0000 5.48e-27
17 8qp8:4 76 63 0.4485 0.8026 0.9683 1.19e-23 8qp9:4, 8qpk:4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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