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BioLiP
>rna
agcuuugcgcaguggcaaucguagccaaugaggucuauccgaggcgcgauugcuaauugccgccgugacgacuugcaaua
uagucggcacuggcaauuuuugacagucucgagacug

The query sequence (length=117) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6ah0:I 117 117 1.0000 1.0000 1.0000 1.24e-57
2 8h6k:4A 128 128 0.9915 0.9062 0.9062 2.11e-40 8h6l:4A
3 6ahd:I 136 136 0.9915 0.8529 0.8529 2.77e-29 8qzs:4
4 8rm5:4 110 122 0.8974 0.9545 0.8607 4.63e-27
5 8qxd:4 124 125 0.8974 0.8468 0.8400 6.00e-26 8r08:4, 8r0a:4
6 5o9z:4 137 136 0.9744 0.8321 0.8382 6.00e-26
7 8h6e:4A 125 125 0.8974 0.8400 0.8400 6.00e-26
8 8h6j:4A 125 126 0.8974 0.8400 0.8333 7.76e-25
9 8r09:4 128 128 0.8974 0.8203 0.8203 4.67e-22 8r0b:4
10 8qo9:4 127 128 0.8974 0.8268 0.8203 4.67e-22
11 8qp8:4 76 62 0.5043 0.7763 0.9516 6.04e-21 8qp9:4, 8qpk:4
12 8qpe:4 63 53 0.4359 0.8095 0.9623 3.63e-18
13 8qpa:4 62 53 0.4359 0.8226 0.9623 3.63e-18
14 8qoz:4 80 64 0.5043 0.7375 0.9219 3.63e-18 8qpb:4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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