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BioLiP
>rna
agagtctctcagcugguacaguuuuagagcuagaaauagcaaguuaaaauaaggcuaguccguuaucaacuugaaaaagu
g

The query sequence (length=81) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7qr1:A 83 81 1.0000 0.9759 1.0000 8.04e-38
2 7qr0:A 82 81 1.0000 0.9878 1.0000 8.04e-38
3 7ox8:A 84 81 1.0000 0.9643 1.0000 8.04e-38
4 7ox7:A 81 81 1.0000 1.0000 1.0000 8.04e-38
5 7zo1:A 85 66 0.8025 0.7647 0.9848 8.15e-28
6 8ygj:B 136 62 0.7654 0.4559 1.0000 2.93e-27
7 8wuv:B 126 62 0.7654 0.4921 1.0000 2.93e-27
8 8wuu:B 111 62 0.7654 0.5586 1.0000 2.93e-27
9 8wut:B 112 62 0.7654 0.5536 1.0000 2.93e-27
10 8wus:B 115 62 0.7654 0.5391 1.0000 2.93e-27
11 5vw1:C 73 62 0.7654 0.8493 1.0000 2.93e-27
12 6vpc:A 81 62 0.7654 0.7654 1.0000 2.93e-27
13 4un4:A 82 62 0.7654 0.7561 1.0000 2.93e-27 4un5:A
14 7s38:R 87 62 0.7654 0.7126 1.0000 2.93e-27
15 6k4s:A 80 62 0.7654 0.7750 1.0000 2.93e-27 6k4u:A
16 6k4p:A 82 62 0.7654 0.7561 1.0000 2.93e-27
17 5fw1:A 81 62 0.7654 0.7654 1.0000 2.93e-27 5fw2:A, 5fw3:A, 6k3z:A, 6k4q:A, 6k57:A, 4un3:A
18 5fq5:A 83 62 0.7654 0.7470 1.0000 2.93e-27
19 6aeb:A 95 62 0.7654 0.6526 1.0000 2.93e-27 6aeb:E, 6aeg:A
20 4zt0:B 72 61 0.7531 0.8472 1.0000 1.05e-26 4zt0:D, 4zt9:B, 4zt9:D
21 7z4g:A 91 61 0.7531 0.6703 1.0000 1.05e-26
22 7z4d:F 77 61 0.7531 0.7922 1.0000 1.05e-26
23 7z4d:A 75 61 0.7531 0.8133 1.0000 1.05e-26
24 8ye6:C 92 61 0.7531 0.6630 1.0000 1.05e-26 7z4h:A
25 5y36:B 99 61 0.7531 0.6162 1.0000 1.05e-26
26 8t78:B 89 61 0.7531 0.6854 1.0000 1.05e-26
27 8t77:B 89 61 0.7531 0.6854 1.0000 1.05e-26 8t79:B
28 8t6y:B 88 61 0.7531 0.6932 1.0000 1.05e-26
29 8t6t:B 95 61 0.7531 0.6421 1.0000 1.05e-26
30 8t6s:B 90 61 0.7531 0.6778 1.0000 1.05e-26 7z4c:A
31 8t6p:B 88 61 0.7531 0.6932 1.0000 1.05e-26 8t76:B, 8t7s:H, 7z4e:A, 7z4k:A
32 7s4v:B 98 61 0.7531 0.6224 1.0000 1.05e-26 7s4x:B, 8spq:B, 8sqh:B, 8srs:B, 8t7s:B, 8tzz:B, 8u3y:B, 7z4j:A
33 7s4u:B 97 61 0.7531 0.6289 1.0000 1.05e-26
34 7s36:R 87 61 0.7531 0.7011 1.0000 1.05e-26 8t6o:B
35 7qr8:A 85 61 0.7531 0.7176 1.0000 1.05e-26
36 7qqw:A 81 64 0.7778 0.7778 0.9844 1.05e-26
37 7qqv:A 85 64 0.7778 0.7412 0.9844 1.05e-26
38 7qqs:A 84 64 0.7778 0.7500 0.9844 1.05e-26 7qqt:A, 7qqu:A, 7qqx:A, 7qqz:A, 7qr5:A
39 7qqq:A 83 61 0.7531 0.7349 1.0000 1.05e-26
40 7qqp:A 84 61 0.7531 0.7262 1.0000 1.05e-26 7qqr:A
41 7oxa:A 81 61 0.7531 0.7531 1.0000 1.05e-26
42 7ox9:A 84 61 0.7531 0.7262 1.0000 1.05e-26 7qqo:A, 7qr7:A
43 4oo8:B 97 61 0.7531 0.6289 1.0000 1.05e-26 4oo8:E
44 6o0z:B 96 61 0.7531 0.6354 1.0000 1.05e-26 8t6x:B, 7z4i:A, 7z4l:A
45 6o0x:B 98 61 0.7531 0.6224 1.0000 1.05e-26 6o0y:B
46 8kal:E 95 61 0.7531 0.6421 1.0000 1.05e-26
47 8kak:A 94 61 0.7531 0.6489 1.0000 1.05e-26 8kak:E, 8kal:A, 8kam:A
48 8kag:A 98 61 0.7531 0.6224 1.0000 1.05e-26
49 6ifo:D 90 61 0.7531 0.6778 1.0000 1.05e-26
50 6ifo:C 88 61 0.7531 0.6932 1.0000 1.05e-26 5xbl:B
51 8g1i:B 98 61 0.7531 0.6224 1.0000 1.05e-26
52 6ai6:B 81 61 0.7531 0.7531 1.0000 1.05e-26 5b2r:A, 5b2s:A, 5b2t:A
53 8ye9:C 90 61 0.7284 0.6556 0.9672 8.21e-23
54 7v59:C 115 46 0.5679 0.4000 1.0000 2.30e-18 7v59:G
55 8fzt:B 69 46 0.5679 0.6667 1.0000 2.30e-18
56 5f9r:A 116 46 0.5679 0.3966 1.0000 2.30e-18 6mcb:B, 6mcc:B, 5vzl:B
57 8kah:I 63 45 0.5556 0.7143 1.0000 8.27e-18 8kah:J, 8kai:I, 8kai:J, 8kaj:I, 8kaj:J

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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