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BioLiP
>rna
agagacuugggcaaugugacugcugaucagcagucacauugcccaagucucuu

The query sequence (length=53) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7w0e:C 53 53 1.0000 1.0000 1.0000 1.67e-22
2 7w0e:C 53 52 0.9811 0.9811 1.0000 6.01e-22
3 7w0d:D 52 52 0.9811 1.0000 1.0000 6.01e-22 7w0d:C, 7w0e:D
4 7w0d:D 52 51 0.9623 0.9808 1.0000 2.16e-21 7w0d:C, 7w0e:D
5 8hf0:N 50 50 0.9434 1.0000 1.0000 7.77e-21
6 8hf0:N 50 49 0.9245 0.9800 1.0000 2.79e-20
7 8hf0:P 47 47 0.8868 1.0000 1.0000 3.61e-19
8 8hf0:P 47 47 0.8868 1.0000 1.0000 3.61e-19
9 7w0c:D 37 37 0.6981 1.0000 1.0000 1.31e-13
10 7w0c:D 37 36 0.6792 0.9730 1.0000 4.71e-13
11 7w0c:C 35 35 0.6604 1.0000 1.0000 1.69e-12
12 7w0c:C 35 35 0.6604 1.0000 1.0000 1.69e-12
13 7w0a:D 32 32 0.6038 1.0000 1.0000 7.88e-11 7w0a:H
14 7w0a:D 32 31 0.5849 0.9688 1.0000 2.83e-10 7w0a:H
15 7w0a:C 31 31 0.5849 1.0000 1.0000 2.83e-10 7w0a:G
16 7w0a:C 31 31 0.5849 1.0000 1.0000 2.83e-10 7w0a:G

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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