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BioLiP
>rna
agaacgcagcgaaaugcgauacguaaugugaauugcagaauuccgugaaucaucgaaucuuug

The query sequence (length=63) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2ww9:D 63 63 1.0000 1.0000 1.0000 5.79e-28 2wwa:D, 2wwb:D
2 8v83:2 150 63 1.0000 0.4200 1.0000 5.79e-28 8v84:2
3 4v6i:DB 157 63 1.0000 0.4013 1.0000 5.79e-28
4 7ohy:2 148 63 1.0000 0.4257 1.0000 5.79e-28
5 7ohx:2 148 63 1.0000 0.4257 1.0000 5.79e-28
6 7ohw:2 149 63 1.0000 0.4228 1.0000 5.79e-28
7 7ohv:2 155 63 1.0000 0.4065 1.0000 5.79e-28 8v87:2
8 7ohu:2 148 63 1.0000 0.4257 1.0000 5.79e-28
9 7ohs:2 147 63 1.0000 0.4286 1.0000 5.79e-28
10 7ohp:2 149 63 1.0000 0.4228 1.0000 5.79e-28
11 7oh3:2 155 63 1.0000 0.4065 1.0000 5.79e-28
12 8hfr:3n 156 63 1.0000 0.4038 1.0000 5.79e-28 6qik:y, 6qt0:y, 6qtz:y, 6ri5:y, 6rzz:y, 6s05:y, 5z3g:B
13 6ft6:2 162 63 1.0000 0.3889 1.0000 5.79e-28
14 8eui:2 158 63 1.0000 0.3987 1.0000 5.79e-28
15 6em3:2 157 63 1.0000 0.4013 1.0000 5.79e-28 6i7o:BS, 6i7o:YS, 8k2d:C3, 6n8k:3, 6n8l:3, 5ndg:8, 5ndv:4, 8p8n:LD, 6sv4:BS, 6sv4:YS, 6sv4:ZS, 6t83:Ca, 6woo:8, 7z34:3, 6z6j:C3, 6z6k:C3
16 8aaf:i 158 63 1.0000 0.3987 1.0000 5.79e-28 8agt:i, 8agu:i, 8agv:i, 8agw:i, 8agx:i, 8agz:i, 5apn:8, 5apo:8, 7azy:G, 7b7d:LC, 8bip:C3, 8bjq:C3, 8bn3:4, 8bqd:BS, 8bqx:BS, 7bt6:2, 7btb:2, 6c0f:2, 6cb1:2, 8ccs:CC, 8cdl:CC, 8cdr:CC, 8ceh:CC, 8cf5:CC, 8cg8:CC, 8cgn:CC, 8civ:CC, 8cku:CC, 8cmj:CC, 5dat:4, 5dat:8, 5dc3:4, 5dc3:8, 5dge:4, 5dge:8, 5dgf:4, 5dgf:8, 5dgv:4, 5dgv:8, 6elz:2, 6em1:2, 6em4:2, 6em5:2, 8eub:A4, 8evp:A4, 8evq:A4, 8evr:A4, 8evs:A4, 8evt:A4, 8ewb:A4, 8ewc:A4, 5fci:4, 5fci:8, 5fcj:4, 5fcj:8, 5gak:4, 6gq1:4, 6gqb:4, 6gqv:4, 5h4p:4, 6hd7:4, 6hhq:4, 6hhq:AT, 5i4l:4, 5i4l:8, 3j6x:8S, 3j6y:8S, 3j77:8S, 3j78:8S, 3jct:2, 5jcs:y, 5juo:C, 5jup:C, 5jus:C, 5jut:C, 5juu:C, 8k82:C3, 5lyb:4, 5lyb:8, 5m1j:44, 6m62:2, 5mc6:BS, 5mei:4, 5mei:AT, 7mpi:A4, 7mpj:A4, 6n8j:3, 6n8m:C, 6n8n:C, 6n8o:C, 7n8b:A4, 7nac:2, 5ndg:4, 5ndv:8, 5ndw:4, 5ndw:8, 7nrc:LC, 7nrd:LC, 5obm:8, 7of1:2, 7ohq:2, 7ohr:2, 6oig:8, 5on6:4, 5on6:AT, 7osa:58S, 7osm:58S, 8p8m:LD, 8p8u:LD, 8pfr:LD, 6q8y:BS, 7r7a:2, 6r84:4, 6r86:4, 6r87:4, 7rr5:C3, 6s47:AC, 6snt:3, 6t4q:C3, 5t62:C, 5t6r:C, 6t7i:C3, 6t7t:C3, 6t83:3b, 5tbw:4, 5tbw:AT, 6tb3:BS, 5tga:4, 5tga:8, 5tgm:4, 5tgm:8, 6tnu:BS, 7too:A58S, 7top:A58S, 7u0h:2, 4u3m:4, 4u3m:8, 4u3n:4, 4u3n:8, 4u3u:4, 4u3u:8, 4u4n:4, 4u4n:8, 4u4o:4, 4u4o:8, 4u4q:4, 4u4q:8, 4u4r:4, 4u4r:8, 4u4u:4, 4u4u:8, 4u4y:4, 4u4y:8, 4u4z:4, 4u4z:8, 4u50:4, 4u50:8, 4u51:4, 4u51:8, 4u52:4, 4u52:8, 4u53:4, 4u53:8, 4u55:4, 4u55:8, 4u56:4, 4u56:8, 4u6f:4, 4u6f:8, 7ug6:2, 7uoo:2, 7uqb:2, 7uqz:2, 7v08:2, 4v7r:B3, 4v7r:D3, 4v88:A4, 4v88:A8, 4v8t:8, 4v8y:B8, 4v8z:B8, 4v91:4, 6xiq:4, 6xir:4, 8y0u:C3, 6ylx:2, 6yly:3, 7zpq:3, 7zrs:3, 7zs5:4, 7zuw:3, 7zux:3, 7zw0:LD
17 7olc:4 156 63 0.9841 0.3974 0.9841 2.69e-26 7old:4, 8oo0:4, 8pv1:C2, 8pv3:C2, 8pv4:C2, 8pv6:C2, 8pv7:C2, 8pvk:C2, 8pvl:C2, 7z3n:4, 7z3o:4
18 8i9t:C2 158 63 0.9841 0.3924 0.9841 2.69e-26 8i9v:C2
19 8i9r:C2 228 63 0.9841 0.2719 0.9841 2.69e-26
20 8i9p:C2 256 63 0.9841 0.2422 0.9841 2.69e-26 8i9w:C2, 8i9x:C2, 8i9y:C2, 8i9z:C2, 8ia0:C2
21 8e5t:2 138 58 0.9206 0.4203 1.0000 3.48e-25
22 8onz:2 59 59 0.9206 0.9831 0.9831 4.50e-24
23 5obm:4 156 63 0.9683 0.3910 0.9683 4.50e-24
24 6ylg:2 154 63 0.9524 0.3896 0.9524 7.54e-22 6ylh:2
25 4v7h:B4 157 63 0.9365 0.3758 0.9365 9.75e-21
26 8eti:2 152 63 0.9206 0.3816 0.9206 5.87e-18
27 8eup:2 146 63 0.9048 0.3904 0.9048 2.73e-16
28 8eug:2 151 63 0.9048 0.3775 0.9048 2.73e-16
29 8etj:2 144 63 0.9048 0.3958 0.9048 2.73e-16
30 8etc:2 147 63 0.9048 0.3878 0.9048 2.73e-16
31 8esq:2 150 63 0.9048 0.3800 0.9048 2.73e-16 8esr:2, 8ev3:2
32 8etg:2 146 41 0.6508 0.2808 1.0000 9.82e-16
33 8euy:2 130 35 0.5556 0.2692 1.0000 2.13e-12
34 8eth:2 130 35 0.5556 0.2692 1.0000 2.13e-12

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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