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BioLiP
>rna
agaaauacgcguuuuagagcuagaaauagcaaguuaaaauaaggcuaguccguuaucaacuugaaaaaguggcaccgagu
cggugcuu

The query sequence (length=88) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8t77:B 89 88 1.0000 0.9888 1.0000 1.15e-41 8t79:B
2 8t6y:B 88 88 1.0000 1.0000 1.0000 1.15e-41
3 8t78:B 89 88 0.9886 0.9775 0.9886 5.35e-40
4 7z4g:A 91 82 0.9318 0.9011 1.0000 2.49e-38
5 8ye6:C 92 82 0.9318 0.8913 1.0000 2.49e-38 7z4h:A
6 8t6t:B 95 82 0.9318 0.8632 1.0000 2.49e-38
7 8t6s:B 90 82 0.9318 0.9111 1.0000 2.49e-38 7z4c:A
8 8t6p:B 88 82 0.9318 0.9318 1.0000 2.49e-38 8t76:B, 8t7s:H, 7z4e:A, 7z4k:A
9 7s4v:B 98 82 0.9318 0.8367 1.0000 2.49e-38 7s4x:B, 8spq:B, 8sqh:B, 8srs:B, 8t7s:B, 8tzz:B, 8u3y:B, 7z4j:A
10 7s4u:B 97 82 0.9318 0.8454 1.0000 2.49e-38
11 6o0z:B 96 82 0.9318 0.8542 1.0000 2.49e-38 8t6x:B, 7z4i:A, 7z4l:A
12 6o0x:B 98 82 0.9318 0.8367 1.0000 2.49e-38 6o0y:B
13 6ifo:D 90 80 0.9091 0.8889 1.0000 3.22e-37
14 6ifo:C 88 80 0.9091 0.9091 1.0000 3.22e-37 5xbl:B
15 4oo8:B 97 79 0.8977 0.8144 1.0000 1.16e-36 4oo8:E
16 8g1i:B 98 78 0.8864 0.7959 1.0000 4.16e-36
17 8ygj:B 136 77 0.8750 0.5662 1.0000 1.50e-35
18 5y36:B 99 77 0.8750 0.7778 1.0000 1.50e-35
19 8wus:B 115 77 0.8750 0.6696 1.0000 1.50e-35
20 7s38:R 87 77 0.8750 0.8851 1.0000 1.50e-35
21 7s36:R 87 77 0.8750 0.8851 1.0000 1.50e-35 8t6o:B
22 8kal:E 95 77 0.8750 0.8105 1.0000 1.50e-35
23 8kak:A 94 77 0.8750 0.8191 1.0000 1.50e-35 8kak:E, 8kal:A, 8kam:A
24 8kag:A 98 77 0.8750 0.7857 1.0000 1.50e-35
25 6aeb:A 95 77 0.8750 0.8105 1.0000 1.50e-35 6aeb:E, 6aeg:A
26 8wuv:B 126 76 0.8636 0.6032 1.0000 5.38e-35
27 8wuu:B 111 76 0.8636 0.6847 1.0000 5.38e-35
28 8wut:B 112 76 0.8636 0.6786 1.0000 5.38e-35
29 8ye9:C 90 82 0.9091 0.8889 0.9756 1.94e-34
30 4zt0:B 72 65 0.7386 0.9028 1.0000 7.01e-29 4zt0:D, 4zt9:B, 4zt9:D
31 7z4d:F 77 65 0.7386 0.8442 1.0000 7.01e-29
32 7z4d:A 75 65 0.7386 0.8667 1.0000 7.01e-29
33 7v59:C 115 63 0.7159 0.5478 1.0000 9.07e-28 7v59:G
34 8fzt:B 69 63 0.7159 0.9130 1.0000 9.07e-28
35 5f9r:A 116 63 0.7159 0.5431 1.0000 9.07e-28 6mcb:B, 6mcc:B, 5vzl:B
36 6ai6:B 81 63 0.7159 0.7778 1.0000 9.07e-28 5b2r:A, 5b2s:A, 5b2t:A
37 7qr8:A 85 62 0.7045 0.7294 1.0000 3.26e-27
38 7qqw:A 81 62 0.7045 0.7654 1.0000 3.26e-27
39 7qqv:A 85 62 0.7045 0.7294 1.0000 3.26e-27
40 7qqs:A 84 62 0.7045 0.7381 1.0000 3.26e-27 7qqt:A, 7qqu:A, 7qqx:A, 7qqz:A, 7qr5:A
41 8kah:I 63 62 0.7045 0.9841 1.0000 3.26e-27 8kah:J, 8kai:I, 8kai:J, 8kaj:I, 8kaj:J
42 7zo1:A 85 61 0.6932 0.7176 1.0000 1.17e-26
43 5vw1:C 73 61 0.6932 0.8356 1.0000 1.17e-26
44 6vpc:A 81 61 0.6932 0.7531 1.0000 1.17e-26
45 4un4:A 82 61 0.6932 0.7439 1.0000 1.17e-26 4un5:A
46 7qr1:A 83 61 0.6932 0.7349 1.0000 1.17e-26
47 7qr0:A 82 61 0.6932 0.7439 1.0000 1.17e-26
48 7qqq:A 83 61 0.6932 0.7349 1.0000 1.17e-26
49 7qqp:A 84 61 0.6932 0.7262 1.0000 1.17e-26 7qqr:A
50 7oxa:A 81 61 0.6932 0.7531 1.0000 1.17e-26
51 7ox9:A 84 61 0.6932 0.7262 1.0000 1.17e-26 7qqo:A, 7qr7:A
52 7ox8:A 84 61 0.6932 0.7262 1.0000 1.17e-26
53 7ox7:A 81 61 0.6932 0.7531 1.0000 1.17e-26
54 6k4s:A 80 61 0.6932 0.7625 1.0000 1.17e-26 6k4u:A
55 6k4p:A 82 61 0.6932 0.7439 1.0000 1.17e-26
56 5fw1:A 81 61 0.6932 0.7531 1.0000 1.17e-26 5fw2:A, 5fw3:A, 6k3z:A, 6k4q:A, 6k57:A, 4un3:A
57 5fq5:A 83 61 0.6932 0.7349 1.0000 1.17e-26
58 7s37:R 46 31 0.3523 0.6739 1.0000 5.58e-10
59 7s3h:R 30 30 0.3409 1.0000 1.0000 2.01e-09

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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