BioLiP

>rna
acucuuagcgguggaucacucggcucgugcgucgaugaagaacgcagcucugcgagaauuaaugugaauugcaggacaca
uugaucaucgacacuucgaacgcacuugcggccccggguucccggggcuacgccugucugagcgucgcuu

The query sequence (length=150) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

#	Hit	Hit length	Aligned length	Identity (normalized by query)	Identity (normalized by hit)	Identity (normalized by aligned length)	E-value	Homologs to hit
1	8fkq:L1	150	150	1.0000	1.0000	1.0000	7.40e-76
2	8fkr:L1	154	152	1.0000	0.9740	0.9868	4.45e-73
3	8fkp:L1	152	152	1.0000	0.9868	0.9868	4.45e-73	8fks:L1, 8fkt:L1, 8fku:L1, 8fkv:L1, 8fkw:L1, 8fkx:L1
4	8fkz:L1	154	152	0.9867	0.9610	0.9737	3.47e-69	8fl2:L1, 8fl3:L1, 8fl4:L1, 8fl6:L1, 8fl7:L1, 8fl9:L1, 8fla:L1, 8flb:L1, 8flc:L1, 8fld:L1, 8fle:L1, 8flf:L1
5	8fky:L1	155	155	1.0000	0.9677	0.9677	1.25e-68
6	5aj0:A3	157	155	1.0000	0.9554	0.9677	1.25e-68	4d5y:3, 4d67:3, 6gz3:A3, 6gz4:A3, 6gz5:A3, 6ole:D, 6olf:D, 6olg:A3, 6oli:D, 6olz:A3, 6om0:D, 6om7:D, 7qgg:D, 6swa:r, 4ujc:A3, 4ujd:A3, 4uje:A3, 4v6x:A8, 6w6l:D
7	6xa1:L8	155	154	0.9933	0.9613	0.9675	4.48e-68
8	7a01:h2	156	154	0.9933	0.9551	0.9675	4.48e-68	7bhp:L8, 8btk:B8, 7cpu:L8, 7cpv:L8, 9f1b:B8, 9f1c:B8, 9f1d:B8, 7f5s:L8, 6frk:8, 6ftg:w, 6fti:w, 6ftj:w, 8g5y:L8, 8g5z:L8, 8g60:L8, 8g61:L8, 8g6j:L8, 8glp:L8, 8idt:8, 8idy:8, 8ie3:8, 8ifd:1C, 8ife:1C, 8ink:8, 6ip5:1C, 6ip6:1C, 6ip8:1C, 8ipd:8, 8ipx:8, 8ipy:8, 3j7o:8, 3j7p:8, 3j7q:8, 3j7r:8, 3j92:8, 3jag:8, 3jah:8, 3jai:8, 3jaj:8, 3jan:8, 8jdj:F, 8jdk:F, 8jdl:F, 8jdm:F, 8k2c:L8, 5lks:L8, 6lqm:8, 6lss:8, 7ls1:C2, 7ls2:C2, 6lu8:8, 7nfx:8, 7nwi:8, 7o7y:B8, 7o7z:B8, 7o80:B8, 7o81:B8, 7obr:8, 8p2k:B8, 8qoi:L8, 7qvp:L1, 7qvp:L8, 7qwq:8, 7qwr:8, 7qws:8, 6qzp:L8, 6r6p:8, 8rjb:v, 8rjc:v, 8rjd:v, 8scb:8, 5t2c:C, 7tm3:v, 7toq:A58S, 7tut:v, 4ug0:L8, 7xnx:L3, 7xny:L3, 8xsx:L8, 8xsy:L8, 8xsz:L8, 6y0g:L8, 8y0w:L8, 8y0x:L8, 6y2l:L8, 6y57:L8, 6y6x:L8, 8yoo:L8, 8yop:L8, 6z6l:L8, 6z6m:L8, 6z6n:L8, 7zjw:L8, 7zjx:L8, 6zm7:L8, 6zme:L8, 6zmi:L8, 6zmo:L8, 6zvk:h2
9	8q7z:B8	157	155	0.9933	0.9490	0.9613	5.80e-67	8q87:B8
10	6lsr:8	155	154	0.9867	0.9548	0.9610	2.09e-66
11	8inf:8	154	154	0.9867	0.9610	0.9610	2.09e-66
12	8ine:8	155	154	0.9867	0.9548	0.9610	2.09e-66	8ir1:8, 8ir3:8
13	8a3d:C	148	151	0.9600	0.9730	0.9536	1.62e-62	8ohd:8, 8oj0:8, 8oj5:8, 8oj8:8
14	7ow7:C	148	151	0.9533	0.9662	0.9470	7.55e-61
15	7ucj:8	150	154	0.9600	0.9600	0.9351	1.26e-58
16	8b5l:8	151	154	0.9600	0.9536	0.9351	1.26e-58	8b6c:8, 9bdl:A58S, 9bdn:A58S, 9bdp:A58S, 8bhf:C2, 8bpo:C1, 6d90:8, 6d9j:8, 6hcf:82, 6hcj:81, 6hcm:82, 6hcq:81, 5lzs:8, 5lzt:8, 5lzu:8, 5lzv:8, 5lzw:8, 5lzx:8, 5lzy:8, 5lzz:8, 7mdz:8, 6mtb:8, 6mtc:8, 6mtd:8, 6mte:8, 7nwg:81, 7nwh:8, 6p5i:8, 6p5j:8, 6p5k:8, 6p5n:8, 6r5q:8, 6r6g:8, 6r7q:8, 6sgc:84, 6t59:84, 7tor:A58S, 7uck:8
17	8qfd:8	144	151	0.9400	0.9792	0.9338	5.88e-57
18	7oyd:8	144	151	0.9400	0.9792	0.9338	5.88e-57
19	7oya:81	158	156	0.9533	0.9051	0.9167	2.74e-55
20	7oyc:81	147	152	0.9333	0.9524	0.9211	3.54e-54
21	7oyb:81	150	152	0.9267	0.9267	0.9145	4.58e-53
22	8bf9:8	98	78	0.4867	0.7449	0.9359	2.21e-26
23	4v5z:B1	97	67	0.4267	0.6598	0.9552	1.33e-23
24	9fpz:8	58	58	0.3733	0.9655	0.9655	7.99e-21	9fq0:8, 8ony:8, 6sxo:L8

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