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BioLiP
>rna
acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuucauguaacaacuaaugaccucagaggcuca
auuuguuacaauacacauuuuuuggcacccaaaauaggacgggaagagacuuuuaaagugagacgucgcgacccucgcag
gagucguucuugacuuuuuggucgcuugauguuucucucuucccguuc

The query sequence (length=208) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6j6g:L 208 208 1.0000 1.0000 1.0000 6.13e-108
2 6j6h:L 209 209 1.0000 0.9952 0.9952 2.85e-106
3 6j6q:L 210 210 1.0000 0.9905 0.9905 3.69e-105
4 6j6n:L 205 209 0.9712 0.9854 0.9665 3.74e-95
5 7b9v:2 196 216 0.8846 0.9388 0.8519 3.99e-50
6 5gmk:L 127 109 0.4952 0.8110 0.9450 3.12e-41
7 5lj3:Z 171 208 0.8125 0.9883 0.8125 8.81e-32 5lj5:Z
8 5lqw:2 81 81 0.3654 0.9383 0.9383 2.47e-27
9 7dco:H 169 73 0.3365 0.4142 0.9589 8.87e-27
10 5gm6:L 66 63 0.2981 0.9394 0.9841 4.13e-25
11 5wsg:L 91 52 0.2500 0.5714 1.0000 3.21e-21 5ylz:F
12 5mq0:2 155 91 0.3846 0.5161 0.8791 3.21e-21
13 5mps:2 49 49 0.2356 1.0000 1.0000 1.50e-19
14 6exn:2 136 61 0.2740 0.4191 0.9344 1.93e-18
15 6bk8:2 135 45 0.2163 0.3333 1.0000 2.50e-17
16 5y88:F 82 43 0.2067 0.5244 1.0000 3.24e-16
17 3jb9:P 111 44 0.2067 0.3874 0.9773 1.51e-14

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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