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BioLiP
>rna
acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucaguguaacaacuaaugaccucagaggcucauauu
uguuacaauacacauuuuuuggcacccaaaauaggacgggaagagacuuuuaaagugagacgucgcgacccucgcaggag
ucguucuugacuuuuuggucgcuugauguuucucucuucccguuc

The query sequence (length=205) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6j6n:L 205 205 1.0000 1.0000 1.0000 2.80e-106
2 6j6q:L 210 210 1.0000 0.9762 0.9762 4.73e-99
3 6j6h:L 209 210 0.9951 0.9761 0.9714 2.20e-97
4 6j6g:L 208 209 0.9854 0.9712 0.9665 3.68e-95
5 7b9v:2 196 213 0.8927 0.9337 0.8592 2.34e-52
6 5gmk:L 127 106 0.4927 0.7953 0.9528 8.55e-42
7 5lj3:Z 171 205 0.8195 0.9825 0.8195 1.44e-34 5lj5:Z
8 5mq0:2 155 79 0.3512 0.4645 0.9114 6.80e-23
9 7dco:H 169 85 0.3659 0.4438 0.8824 4.09e-20
10 5lqw:2 81 81 0.3512 0.8889 0.8889 1.47e-19
11 6bk8:2 135 56 0.2634 0.4000 0.9643 1.47e-19
12 6exn:2 136 53 0.2488 0.3750 0.9623 1.90e-18
13 5wsg:L 91 46 0.2244 0.5055 1.0000 6.85e-18 5ylz:F
14 5mps:2 49 46 0.2244 0.9388 1.0000 6.85e-18
15 5gm6:L 66 46 0.2244 0.6970 1.0000 6.85e-18
16 5y88:F 82 43 0.2098 0.5244 1.0000 3.19e-16
17 3jb9:P 111 39 0.1902 0.3514 1.0000 5.33e-14

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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