Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>rna
accuuaagauaucagaggaaaguccuacugaucaaacaugcgcuuccaauaguagaaggacguuaagcauuuaucauuga
acuguucauugaagucauugaugcaaacuccuuggucacacacacauacggcgcggaaggcguguuugcugacguuucca
uucccuuguuucaaucauugguuaaacugauuuuuggggcccuuuguuucuucugccuggagaaguuugacaccaaauuc
aaauugguguuaggggagcuggggccuuucaaaaaaauuuuggaaggucuugguaggaacggguggaucuuauaauuuuu
gauuuau

The query sequence (length=327) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8w2o:R 327 327 1.0000 1.0000 1.0000 7.02e-174
2 6n7x:R 308 324 0.9388 0.9968 0.9475 7.37e-139
3 5zwn:P 480 289 0.8257 0.5625 0.9343 1.64e-115
4 5zwn:P 480 53 0.1621 0.1104 1.0000 1.45e-21
5 6n7r:R 558 191 0.5657 0.3315 0.9686 1.32e-86
6 6n7r:R 558 95 0.2905 0.1703 1.0000 6.52e-45
7 6n7r:R 558 55 0.1682 0.0986 1.0000 1.12e-22
8 6n7p:R 558 191 0.5627 0.3297 0.9634 6.16e-85 7oqc:1, 7oqe:1
9 6n7p:R 558 95 0.2905 0.1703 1.0000 6.52e-45 7oqc:1, 7oqe:1
10 6n7p:R 558 55 0.1682 0.0986 1.0000 1.12e-22 7oqc:1, 7oqe:1
11 6g90:1 327 281 0.7217 0.7217 0.8399 1.77e-60

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218