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BioLiP
>rna
aauuucuacucuuguagaugugauaaguggaaugccaug

The query sequence (length=39) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8sfo:B 39 39 1.0000 1.0000 1.0000 6.07e-15 8sfp:B, 8sfq:B, 8sfr:B
2 8sfn:B 36 36 0.9231 1.0000 1.0000 2.83e-13
3 8sfl:B 34 34 0.8718 1.0000 1.0000 3.66e-12
4 8sfj:B 29 29 0.7436 1.0000 1.0000 2.20e-09
5 8sfi:B 28 28 0.7179 1.0000 1.0000 7.91e-09

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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