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BioLiP
>rna
aaucccccgugcccauagcggcguggaaccacccguucccauuccgaacacggaagugaaacgcgccagcgccgauggua
cugggcgggcgaccgccugggagaguaggucggugcgggggau

The query sequence (length=123) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5a9z:AB 123 123 1.0000 1.0000 1.0000 6.05e-61 5aa0:AB, 5imq:E, 5imr:E, 4v4p:AB, 4v4r:BB, 4v4s:BB, 4v4t:BB, 4v4x:BB, 4v4y:BB, 4v4z:BB, 5zlu:X
2 7azo:5SA 122 122 0.9919 1.0000 1.0000 2.18e-60 7azs:5SA, 5e7k:16, 5e7k:1J, 5e81:16, 5e81:1J, 5el4:16, 5el4:1J, 5el5:16, 5el5:1J, 5el6:16, 5el6:1J, 5el7:16, 5el7:1J, 6gsj:16, 6gsj:1J, 6gsk:16, 6gsk:1J, 6gsl:16, 6gsl:1J, 6gzq:B1, 6gzx:B1, 6gzx:B2, 6gzz:B1, 6gzz:B2, 5ib7:16, 5ib7:1J, 5ib8:16, 5ib8:1J, 5ibb:16, 5ibb:1J, 5ndj:16, 5ndj:1J, 5ndk:16, 5ndk:1J, 6otr:RB, 6otr:YB, 6qnq:1J, 6qnr:16, 4v6f:AB, 4v6f:DB, 4v87:AB, 4v87:DB, 4v8b:BB, 4v8b:DB, 4v8c:AB, 4v8c:BB, 4v8d:BB, 4v8d:DB, 4v8e:AB, 4v8e:CB, 4v8f:AB, 4v8f:DB, 4v9a:BB, 4v9a:DB, 4v9b:BB, 4v9b:DB, 4w4g:RB, 4w4g:YB, 4wq1:16, 4wq1:1J, 4wqr:16, 4wqr:1J, 4wr6:16, 4wr6:1J, 4wra:16, 4wra:1J, 4wro:16, 4wsd:16, 4wsd:1J, 4wsm:16, 4wsm:1J, 4wt1:16, 4wt1:1J, 4wu1:16, 4wu1:1J, 4wzd:16, 4wzd:1J, 4wzo:16, 4wzo:1J, 4ypb:RB, 4ypb:YB, 4yzv:RB, 4yzv:YB, 4zsn:RB, 4zsn:YB
3 7azo:5SB 121 121 0.9837 1.0000 1.0000 7.83e-60 7azs:5SB, 6qnr:1J
4 4v6g:BB 120 120 0.9756 1.0000 1.0000 2.82e-59
5 9b00:1B 120 120 0.9756 1.0000 1.0000 2.82e-59 9b00:2B, 6b4v:C, 6b4v:GB, 6boh:C, 6boh:HB, 6bok:C, 6bok:FB, 6buw:RB, 6buw:YB, 6bz6:RB, 6bz6:YB, 6bz7:RB, 6bz7:YB, 6bz8:RB, 6bz8:YB, 6cae:1B, 6cae:2B, 6cfj:1B, 6cfj:2B, 6cfk:1B, 6cfk:2B, 6cfl:1B, 6cfl:2B, 8cvj:1B, 8cvj:2B, 8cvk:1B, 8cvk:2B, 8cvl:1B, 8cvl:2B, 5czp:YB, 5czp:RB, 6czr:1B, 6czr:2B, 5dfe:YB, 5dfe:RB, 5dox:1B, 5dox:2B, 5doy:1B, 5doy:2B, 8ekb:1B, 8ekb:2B, 8ev6:1B, 8ev6:2B, 8ev7:1B, 8ev7:2B, 5f8k:1B, 5f8k:2B, 8fc1:1B, 8fc1:2B, 8fc2:1B, 8fc2:2B, 8fc3:1B, 8fc3:2B, 8fc4:1B, 8fc4:2B, 8fc5:1B, 8fc5:2B, 8fc6:1B, 8fc6:2B, 5fdu:1B, 5fdu:2B, 5fdv:1B, 5fdv:2B, 6fkr:1B, 6fkr:2B, 8fom:RB, 8fom:YB, 8fon:RB, 8fon:YB, 8g29:1B, 8g29:2B, 8g2a:1B, 8g2a:2B, 8g2b:1B, 8g2b:2B, 8g2c:1B, 8g2c:2B, 8g2d:1B, 8g2d:2B, 5hau:1B, 5hau:2B, 5hcp:1B, 5hcp:2B, 5hcq:1B, 5hcq:2B, 5hcr:1B, 5hcr:2B, 5hd1:1B, 5hd1:2B, 5j30:RB, 5j30:YB, 5j3c:RB, 5j3c:YB, 5j4b:1B, 5j4b:2B, 5j4c:1B, 5j4c:2B, 5j4d:C, 5j4d:HB, 5j8b:B, 7jql:1B, 7jql:2B, 7jqm:1B, 7jqm:2B, 4l47:RB, 4l47:YB, 4l71:RB, 4l71:YB, 4lel:RB, 4lel:YB, 4lfz:RB, 4lfz:YB, 7lh5:BB, 4lnt:RB, 4lnt:YB, 4lsk:RB, 4lsk:YB, 4lt8:RB, 4lt8:YB, 7md7:1B, 7md7:2B, 6n9e:1B, 6n9e:2B, 6n9f:1B, 6n9f:2B, 6nd5:1B, 6nd5:2B, 6nd6:1B, 6nd6:2B, 6ndk:RB, 6ndk:YB, 6nsh:RB, 6nsh:YB, 6nta:RB, 6nta:YB, 6nuo:RB, 6nuo:YB, 6nwy:RB, 6nwy:YB, 6o3m:RB, 6o3m:YB, 6o97:1B, 6o97:2B, 6of1:1B, 6of1:2B, 6of6:RB, 6of6:YB, 6oj2:RB, 6oj2:YB, 6ope:RB, 6ope:YB, 6ord:RB, 6ord:YB, 6osi:RB, 6osi:YB, 6oxa:RB, 6oxa:YB, 6oxi:RB, 6oxi:YB, 4p6f:RB, 4p6f:YB, 4p70:RB, 4p70:YB, 6qnq:16, 7rq8:1B, 7rq8:2B, 7rq9:1B, 7rq9:2B, 7rqa:1B, 7rqa:2B, 7rqb:1B, 7rqb:2B, 7rqc:1B, 7rqc:2B, 7rqd:1B, 7rqd:2B, 7rqe:1B, 7rqe:2B, 8t8b:1B, 8t8b:2B, 8t8c:1B, 8t8c:2B, 4tua:RB, 4tua:YB, 4tub:RB, 4tub:YB, 4tuc:RB, 4tuc:YB, 4tud:RB, 4tud:YB, 4tue:RB, 4tue:YB, 7u2h:1B, 7u2h:2B, 7u2i:1B, 7u2i:2B, 7u2j:1B, 7u2j:2B, 6ucq:1B, 6ucq:2B, 8ud6:1B, 8ud6:2B, 8ud7:1B, 8ud7:2B, 8ud8:1B, 8ud8:2B, 6uo1:1B, 6uo1:2B, 5uq7:B, 5uq8:B, 8uvr:1B, 8uvr:2B, 8uvs:1B, 8uvs:2B, 4v4i:x, 4v4j:x, 4v6g:DB, 4v8g:BB, 4v8g:DB, 4v8h:BB, 4v8h:DB, 4v8i:BB, 4v8i:DB, 4v95:BB, 4v95:DB, 4v9r:BB, 4v9r:DB, 4v9s:BB, 4v9s:DB, 5vp2:1B, 5vp2:2B, 5vpo:RB, 5vpo:YB, 5vpp:RB, 5vpp:YB, 8vtu:1B, 8vtu:2B, 8vtv:1B, 8vtv:2B, 8vtw:1B, 8vtw:2B, 8vtx:1B, 8vtx:2B, 8vty:1B, 8vty:2B, 1vvj:RB, 1vvj:YB, 1vy4:BB, 1vy4:DB, 1vy5:BB, 1vy5:DB, 1vy6:BB, 1vy6:DB, 1vy7:BB, 1vy7:DB, 4w2e:B, 4w2f:BB, 4w2f:DB, 4w2g:BB, 4w2g:DB, 4w2h:BB, 4w2h:DB, 4w2i:BB, 4w2i:DB, 5w4k:1B, 5w4k:2B, 5wis:1B, 5wis:2B, 5wit:1B, 5wit:2B, 4wpo:AB, 4wpo:CB, 4wqf:AB, 4wqf:CB, 4wqu:AB, 4wqu:CB, 4wqy:AB, 4wqy:CB, 6xhv:1B, 6xhv:2B, 6xhw:1B, 6xhw:2B, 6xhx:1B, 6xhx:2B, 6xhy:1B, 6xhy:2B, 6xqd:1B, 6xqd:2B, 6xqe:1B, 6xqe:2B, 4y4o:1B, 4y4o:2B, 4y4p:1B, 4y4p:2B, 4z3s:1B, 4z3s:2B, 4z8c:1B, 4z8c:2B, 4zer:1B, 4zer:2B
6 4v8a:AB 120 119 0.9675 0.9917 1.0000 1.01e-58 4v8a:BB
7 6c5l:BB 119 119 0.9675 1.0000 1.0000 1.01e-58 6c5l:DB, 5d8b:WC, 5d8b:AD, 7lh5:DB, 6n1d:A5S, 6n1d:B5S, 5ot7:5, 6q95:3, 4v51:BB, 4v51:DB, 4v5a:BB, 4v5a:DB, 4v5c:BB, 4v5c:DB, 4v5d:BB, 4v5d:DB, 4v5e:BB, 4v5e:DB, 4v5f:BB, 4v5f:DB, 4v5g:BB, 4v5g:DB, 4v5j:BB, 4v5j:DB, 4v5k:BB, 4v5k:DB, 4v5l:BB, 4v5m:BB, 4v5n:BB, 4v5p:BB, 4v5p:DB, 4v5q:BB, 4v5q:DB, 4v5r:BB, 4v5r:DB, 4v5s:BB, 4v5s:DB, 4v63:BB, 4v63:DB, 4v67:BB, 4v67:DB, 4v68:BB, 4v6a:BB, 4v6a:DB, 4v7j:AB, 4v7j:BB, 4v7k:AB, 4v7k:BB, 4v7m:BB, 4v7m:DB, 4v7p:BB, 4v7p:CB, 4v7w:BB, 4v7w:DB, 4v7x:BB, 4v7x:DB, 4v7y:BB, 4v7y:DB, 4v7z:BB, 4v7z:DB, 4v83:BB, 4v83:DB, 4v84:BB, 4v84:DB, 4v8j:BB, 4v8j:DB, 4v8n:BB, 4v8n:DB, 4v8o:BB, 4v8q:AB, 4v8u:BB, 4v8u:DB, 4v8x:BB, 4v8x:DB, 4v90:BB, 4v97:BB, 4v97:DB, 4v9h:BB, 4v9i:BB, 4v9i:DB, 4v9j:BB, 4v9j:DB, 4v9k:BB, 4v9k:DB, 4v9l:BB, 4v9l:DB, 4v9m:BB, 4v9m:DB, 4v9n:BB, 4v9n:DB, 4v9q:AB, 4v9q:CB, 4w29:BB, 4w29:DB, 4wt8:Cs, 4wt8:Ds, 4xej:A5S, 4xej:B5S
8 5v8i:1B 118 118 0.9593 1.0000 1.0000 3.64e-58 5v8i:2B
9 4v7l:BB 118 119 0.9593 1.0000 0.9916 1.70e-56 4v7l:DB

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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